cartoonist / psiLinks
Pan-genome Seed Index
☆20Updated 2 months ago
Alternatives and similar repositories for psi
Users that are interested in psi are comparing it to the libraries listed below
Sorting:
- ☆28Updated last month
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last week
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- ☆15Updated 4 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- General purpose utility related to GAF files☆28Updated last week
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- ☆28Updated 8 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- ☆25Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- GBWT-based handle graph☆31Updated 2 months ago
- ☆17Updated 4 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 7 years ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- De Bruijn graph representation in low memory☆36Updated 10 months ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆16Updated 6 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆50Updated this week
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year