cartoonist / psiLinks
Pan-genome Seed Index
☆20Updated 7 months ago
Alternatives and similar repositories for psi
Users that are interested in psi are comparing it to the libraries listed below
Sorting:
- Parallel Sequence to Graph Alignment☆36Updated 2 years ago
- ☆28Updated 6 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- ☆24Updated 2 months ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- GBWT-based handle graph☆31Updated last week
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 7 months ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- ☆28Updated last year
- recompute GFA link overlaps☆25Updated 3 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated last year
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- ☆17Updated 4 years ago
- De Bruijn graph representation in low memory☆35Updated last year
- General purpose utility related to GAF files☆29Updated this week
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 7 months ago
- Utilities to detect and profile `het-kmers`☆11Updated last year
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- de Bruijn Graph-based read aligner☆34Updated 7 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 5 years ago
- ☆17Updated 2 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Updated 8 years ago
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago