Alternatives and similar repositories for nthash

Users that are interested in nthash are comparing it to the libraries listed below

• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated last year
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆31Updated last year
• jltsiren / gbwt-rs
  GBWT in Rust
  ☆43Updated 2 months ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆30Updated 11 months ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆51Updated 2 weeks ago
• natir / yacrd
  Yet Another Chimeric Read Detector
  ☆80Updated 7 months ago
• chfi / rs-gfa
  GFA parser in Rust
  ☆31Updated 2 years ago
• jermp / fulgor
  ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆50Updated this week
• AlgoLab / RecGraph
  Optimal sequence-to-graph alignment with recombinations
  ☆32Updated 4 months ago
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆25Updated 2 months ago
• algbio / ggcat
  Compacted and colored de Bruijn graph construction and querying
  ☆83Updated this week
• rust-seq / simd-minimizers
  A SIMD-accelerated library to compute random minimizers
  ☆29Updated last week
• bede / deacon
  Fast (host) DNA sequence filtering
  ☆60Updated this week
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated 7 months ago
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 4 months ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated last year
• natir / rustyread
  A long read simulator based on badread idea
  ☆22Updated 2 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆69Updated 11 months ago
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆45Updated 8 months ago
• jguhlin / sfasta
  sfasta
  ☆35Updated last month
• HudsonAlpha / fmlrc2
  ☆48Updated 2 years ago
• rhysnewell / Lorikeet
  Strain resolver for metagenomics
  ☆75Updated 10 months ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆79Updated 3 months ago
• bacpop / ska.rust
  Split k-mer analysis – version 2
  ☆87Updated 4 months ago
• natir / biotest
  Generate random test data for bioinformatics
  ☆26Updated last year
• Malfoy / Blight
  De Bruijn graph representation in low memory
  ☆36Updated 11 months ago
• Kmer-File-Format / kff-tools
  ☆17Updated 2 years ago
• ratschlab / Project2020-seq-tensor-sketching
  ☆8Updated 3 years ago