Malfoy / MiekkiView external linksLinks
Minhash Index Extended to Knead Kmer Intersection
☆11Mar 18, 2020Updated 5 years ago
Alternatives and similar repositories for Miekki
Users that are interested in Miekki are comparing it to the libraries listed below
Sorting:
- ☆20Aug 18, 2020Updated 5 years ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 6 years ago
- ☆12Sep 7, 2019Updated 6 years ago
- BagMinHash - Minwise Hashing Algorithm for Weighted Sets☆26Aug 26, 2020Updated 5 years ago
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Mar 22, 2021Updated 4 years ago
- ☆18Nov 21, 2024Updated last year
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Apr 23, 2021Updated 4 years ago
- ☆24Apr 2, 2021Updated 4 years ago
- Practical Dynamic de Bruijn Graphs☆18Oct 1, 2020Updated 5 years ago
- Histosketching Using Little Kmers☆56May 25, 2023Updated 2 years ago
- Pan-genome Seed Index☆20Mar 12, 2025Updated 11 months ago
- ☆10Jun 16, 2022Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- Johns Hopkins University student-led genomics paper discussion group☆13Apr 19, 2020Updated 5 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 6 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆28Apr 24, 2025Updated 9 months ago
- An efficient index for the colored, compacted, de Bruijn graph☆111Oct 7, 2024Updated last year
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆88Jan 25, 2024Updated 2 years ago
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated last month
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 2 years ago
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Jun 29, 2021Updated 4 years ago
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- ELECTOR: EvaLuator of Error Correction Tools for lOng Reads☆15May 27, 2021Updated 4 years ago
- This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.☆20Oct 15, 2018Updated 7 years ago
- Benchmarking pairwise aligners☆36Feb 8, 2025Updated last year
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆52May 16, 2022Updated 3 years ago
- De Bruijn graph representation in low memory☆35Jul 6, 2024Updated last year
- Graph-based mapping of long sequences, noisy or HiFi.☆55Oct 5, 2020Updated 5 years ago
- ☆21Jul 6, 2023Updated 2 years ago
- ☆11Feb 16, 2021Updated 5 years ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated last year
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆40Jul 15, 2019Updated 6 years ago
- Parallel Sequence to Graph Alignment☆36Nov 26, 2022Updated 3 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- GBWT in Rust☆45Dec 26, 2025Updated last month
- Fast and accurate set similarity estimation via containment min hash☆42Jul 19, 2024Updated last year
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12May 9, 2013Updated 12 years ago