Malfoy / BGREAT2Links
Paired reads mapping on de Bruijn graph
☆13Updated 6 years ago
Alternatives and similar repositories for BGREAT2
Users that are interested in BGREAT2 are comparing it to the libraries listed below
Sorting:
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- ☆15Updated 4 years ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆16Updated 6 years ago
- Assembly and scaffolding of bacterial genomes in real time using MinION-sequencing☆9Updated 7 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 7 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 7 months ago
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆28Updated 10 years ago
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆14Updated 7 years ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 2 weeks ago
- Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes☆10Updated last month
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Sketch-based surveillance platform☆13Updated 5 months ago
- Strain resolved metagenome simulator☆13Updated 6 years ago
- Variant call verification☆16Updated 3 weeks ago
- blast, shmlast☆22Updated 4 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Updated 7 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 2 months ago
- ☆45Updated 3 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- ☆28Updated last month