Malfoy / BGREAT2
Paired reads mapping on de Bruijn graph
☆13Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for BGREAT2
- Code to create a PRG from a Multiple Sequence Alignment file☆22Updated 7 months ago
- Assembly and scaffolding of bacterial genomes in real time using MinION-sequencing☆9Updated 6 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆13Updated last month
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 2 years ago
- ☆15Updated 4 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆28Updated 9 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 7 years ago
- ☆15Updated 4 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆22Updated last year
- Haplotype-aware genome assembly toolkit☆29Updated 4 years ago
- de Bruijn Graph REAd mapping Tool☆14Updated 7 years ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆16Updated 5 years ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Variant call adjudication☆16Updated 5 months ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 4 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Updated 6 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last year
- ☆28Updated last year
- Variant call verification☆15Updated last year
- blast, shmlast☆21Updated 4 years ago
- Methods to determine sequence element (unitig) presence/absence☆18Updated 10 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated last year
- Indel-aware consensus from aligned BAMs☆20Updated last year
- Pipeline for Evaluating Prokaryotic References☆11Updated 8 years ago
- ☆14Updated 8 years ago
- ☆29Updated last year
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- ☆16Updated 6 years ago