ocxtal / dozeuLinks
SIMD-parallel BLAST X-drop DP on sequence graphs
☆25Updated last year
Alternatives and similar repositories for dozeu
Users that are interested in dozeu are comparing it to the libraries listed below
Sorting:
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- GBWT in Rust☆43Updated 4 months ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated 2 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆25Updated 3 months ago
- ☆25Updated 4 years ago
- ☆28Updated 3 months ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- ☆25Updated 4 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- A hash map using the BooPHF perfect hash function☆13Updated 8 years ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆16Updated 6 years ago
- GBWT-based handle graph☆31Updated last month
- Space-efficient pseudoalignment with a colored de Bruijn graph☆53Updated 4 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- Johns Hopkins University student-led genomics paper discussion group☆13Updated 5 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 4 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated last year
- Library for the Handle Graph abstraction☆23Updated 3 weeks ago
- ☆14Updated 4 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Wavefront alignment algorithm (WFA) in Golang☆30Updated last week
- De Bruijn graph representation in low memory☆36Updated last year
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- URMAP ultra-fast read mapper☆39Updated 5 years ago