SIMD-parallel BLAST X-drop DP on sequence graphs
☆24May 30, 2024Updated last year
Alternatives and similar repositories for dozeu
Users that are interested in dozeu are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 3 years ago
- An alignment-free, reference-free and incremental data structure for colored de Bruijn graph with application to pan-genome indexing.☆44Jan 28, 2022Updated 4 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Simple and fast MinHash implementation in C with Python wrapper☆13Jul 24, 2025Updated 8 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated last year
- Substring index for paths in a graph☆60Mar 17, 2026Updated last week
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 6 years ago
- LogLog space version of MinHash by combining ideas from HyperLogLog and b-bit MinHash☆57Feb 19, 2020Updated 6 years ago
- ☆32Dec 16, 2022Updated 3 years ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆27Oct 28, 2021Updated 4 years ago
- De Bruijn graph representation in low memory☆35Jul 6, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Practical Dynamic de Bruijn Graphs☆18Oct 1, 2020Updated 5 years ago
- Benchmarking pairwise aligners☆37Feb 8, 2025Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- Graph-based mapping of long sequences, noisy or HiFi.☆55Oct 5, 2020Updated 5 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Feb 18, 2020Updated 6 years ago
- WFA-lib: Wavefront alignment algorithm library v2☆210Mar 18, 2026Updated last week
- Self-contained, multi-threaded fasta/q parser☆48Mar 10, 2026Updated 2 weeks ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Wavefront alignment algorithm (WFA) in Golang☆31Jul 26, 2025Updated 7 months ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆88Jan 25, 2024Updated 2 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- SIMD partial order alignment tool/library☆176Sep 21, 2025Updated 6 months ago
- Implicit Interval Tree with Interpolation Index☆42Jul 13, 2022Updated 3 years ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆136Feb 22, 2026Updated last month
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Dec 6, 2024Updated last year
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Parallel Sequence to Graph Alignment☆36Nov 26, 2022Updated 3 years ago
- The D4 Quantitative Data Format☆169Nov 28, 2025Updated 3 months ago
- Rust wrapper for STAR aligner☆19Mar 16, 2026Updated last week
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- K-mer substring space decomposition☆44Sep 1, 2025Updated 6 months ago
- vector illustrations of BWT based searching on small strings☆16Apr 29, 2019Updated 6 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago