Alternatives and similar repositories for dozeu

Users that are interested in dozeu are comparing it to the libraries listed below

• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 3 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago
• jltsiren / gbwt-rs
  GBWT in Rust
  ☆42Updated 6 months ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆30Updated 2 years ago
• medvedevgroup / UST
  ☆24Updated 4 years ago
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆26Updated 6 months ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆49Updated 4 years ago
• algbio / themisto
  Space-efficient pseudoalignment with a colored de Bruijn graph
  ☆52Updated 7 months ago
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆46Updated last year
• ekg / HLA-zoo
  genome variation graphs constructed from HLA GRCh38 ALTs
  ☆23Updated 3 years ago
• rob-p / BooM
  A hash map using the BooPHF perfect hash function
  ☆13Updated 9 years ago
• langmead-lab / vargas
  ☆24Updated last month
• Malfoy / Blight
  De Bruijn graph representation in low memory
  ☆35Updated last year
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated last year
• VGP / vgp-tools
  ☆28Updated 6 months ago
• biointec / browniealigner
  Alignment algorithm for short Illumina reads to a de Bruijn graph
  ☆17Updated 6 years ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• jermp / fulgor
  ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆55Updated 2 weeks ago
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 3 years ago
• vgteam / libhandlegraph
  Library for the Handle Graph abstraction
  ☆24Updated last week
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆36Updated 2 years ago
• cdarby / genomicsjc
  Johns Hopkins University student-led genomics paper discussion group
  ☆13Updated 5 years ago
• rvaser / rala
  Layout module for raw de novo genome assembly of long uncorrected reads.
  ☆21Updated 4 years ago
• natir / nuc2bit
  ☆14Updated 5 years ago
• mkirsche / sapling
  SAPLING: Suffix Array Piecewise Linear INdex for Genomics
  ☆25Updated 5 years ago
• ddiazdom / lcg
  Efficient, parallel compression for terabyte-scale data
  ☆48Updated 3 weeks ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated last week
• rust-seq / simd-minimizers
  A SIMD-accelerated library to compute random minimizers
  ☆33Updated last week
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆32Updated 2 months ago