Alternatives and similar repositories for dozeu:

Users that are interested in dozeu are comparing it to the libraries listed below

• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 3 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• ekg / dozyg
  sequence to graph mapper
  ☆11Updated 4 years ago
• langmead-lab / vargas
  ☆25Updated 3 years ago
• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆34Updated 2 years ago
• rvaser / rala
  Layout module for raw de novo genome assembly of long uncorrected reads.
  ☆21Updated 4 years ago
• lh3 / rmaxcut
  An experimental tool to find approximate max-cuts in a large graph
  ☆11Updated 3 years ago
• jltsiren / gbwt-rs
  GBWT in Rust
  ☆43Updated 2 weeks ago
• medvedevgroup / TwoPaCo
  A fast constructor of the compressed de Bruijn graph from many genomes
  ☆40Updated 2 months ago
• VGP / vgp-tools
  ☆28Updated last week
• lh3 / lv89
  C implementation of the Landau-Vishkin algorithm
  ☆35Updated 3 years ago
• mkirsche / sapling
  SAPLING: Suffix Array Piecewise Linear INdex for Genomics
  ☆25Updated 4 years ago
• alshai / Big-BWT
  modified from gitlab.com/manzai/Big-BWT to support fasta files
  ☆9Updated 2 months ago
• Kmer-File-Format / kff-tools
  ☆17Updated last year
• algbio / SBWT
  Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)
  ☆24Updated last month
• vgteam / libhandlegraph
  Library for the Handle Graph abstraction
  ☆23Updated last month
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated 9 months ago
• maxrossi91 / moni
  MONI: A Pangenomic Index for Finding MEMs
  ☆37Updated 3 weeks ago
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆24Updated last month
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated last month
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆54Updated 2 years ago
• cdarby / genomicsjc
  Johns Hopkins University student-led genomics paper discussion group
  ☆13Updated 5 years ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated 10 months ago
• jermp / fulgor
  Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆49Updated this week
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆16Updated 6 years ago
• vgteam / gssw
  efficient alignment of strings to partially ordered string graphs
  ☆33Updated 3 years ago
• edawson / svaha
  Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
  ☆12Updated last year
• ekg / HLA-zoo
  genome variation graphs constructed from HLA GRCh38 ALTs
  ☆23Updated 3 years ago
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆35Updated 2 years ago