Malfoy / PAC
☆10Updated last year
Alternatives and similar repositories for PAC:
Users that are interested in PAC are comparing it to the libraries listed below
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Fast and cache-efficient full-text pangenome index☆27Updated last week
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- ☆25Updated 3 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆40Updated 2 months ago
- ☆14Updated 9 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆53Updated 3 weeks ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Sequence Bloom Trees with All/Some split☆11Updated 6 years ago
- ☆28Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆24Updated last month
- Validation of sycnmers compared to minimizers☆11Updated 4 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- ☆15Updated 4 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 2 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 3 years ago
- Classify sequencing reads using MinHash.☆48Updated 4 years ago
- comb aligner -- a graphical nucleotide sequence alignment tool☆9Updated 8 years ago
- ☆17Updated 4 months ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Indel-aware consensus for aligned BAM☆21Updated this week
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆20Updated 5 months ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆19Updated 2 months ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 5 months ago
- Fulgor is a fast and space-efficient colored de Bruijn graph index.☆49Updated last month
- Johns Hopkins University student-led genomics paper discussion group☆13Updated 4 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆21Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year