☆10Feb 23, 2024Updated 2 years ago
Alternatives and similar repositories for PAC
Users that are interested in PAC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Minimum plain text representation of kmer sets☆18Jan 30, 2025Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆57Mar 13, 2025Updated last year
- Wavefront alignment algorithm (WFA) in Golang☆32Jul 10, 2026Updated last week
- dynamic-updateable-index☆11Nov 10, 2015Updated 10 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Comparing and combining multiple metagenomic datasets☆16Oct 12, 2022Updated 3 years ago
- ☆15Apr 6, 2016Updated 10 years ago
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 3 years ago
- Fast and space-efficient taxonomic classification of long reads☆45Updated this week
- A graph aligner☆31Sep 17, 2024Updated last year
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 4 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated 2 months ago
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆55Updated this week
- AVX-2 vectorised 8-bit positional popcount for Go☆23Aug 28, 2020Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Code to create a PRG from a Multiple Sequence Alignment file☆25Sep 10, 2025Updated 10 months ago
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 4 years ago
- ☆10Feb 14, 2022Updated 4 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Fast and accurate set similarity estimation via containment min hash☆42Jul 19, 2024Updated 2 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10May 29, 2017Updated 9 years ago
- modular k-mer count matrix and Bloom filter construction for large read collections☆89Jun 26, 2026Updated 3 weeks ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- An alignment-free, reference-free and incremental data structure for colored de Bruijn graph with application to pan-genome indexing.☆44Jan 28, 2022Updated 4 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 7 years ago
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Apr 25, 2022Updated 4 years ago
- Python3 wrapper for GATB-Core.☆10Dec 16, 2017Updated 8 years ago
- ☆14Jan 20, 2016Updated 10 years ago
- ☆74Mar 1, 2019Updated 7 years ago
- de Bruijn Graph-based read aligner☆36Sep 3, 2018Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- compacted de Bruijn graph construction in low memory☆101Nov 4, 2025Updated 8 months ago
- LogLog space version of MinHash by combining ideas from HyperLogLog and b-bit MinHash☆57Feb 19, 2020Updated 6 years ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- Write-once-read-many table for large datasets.☆27Oct 5, 2023Updated 2 years ago
- sequence element (kmer) enrichment analysis☆45Nov 7, 2022Updated 3 years ago
- The Dagstuhl Format for Assembly☆13Oct 16, 2017Updated 8 years ago