Malfoy / PAC
☆10Updated 11 months ago
Alternatives and similar repositories for PAC:
Users that are interested in PAC are comparing it to the libraries listed below
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆19Updated 3 months ago
- ☆25Updated 3 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 3 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 5 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆23Updated 2 weeks ago
- ☆17Updated last year
- ☆17Updated 4 years ago
- General purpose utility related to GAF files☆22Updated last week
- Fast and cache-efficient full-text pangenome index☆27Updated this week
- ☆14Updated 9 years ago
- ☆14Updated last year
- Next Index to Query Kmer Intersection☆16Updated last year
- De Bruijn graph construction for large k.☆18Updated 3 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆22Updated 9 months ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆21Updated last year
- recompute GFA link overlaps☆25Updated 2 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 2 years ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Updated last month
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 3 months ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Updated 7 years ago
- Optimal distance lower bound k-mer sampling.☆12Updated 7 months ago
- ☆21Updated 4 months ago
- Lift-over alignments from variant-aware references☆34Updated last year
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 7 years ago
- Sequence Bloom Trees with All/Some split☆11Updated 6 years ago
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Updated 5 years ago