Malfoy / PAC

Related projects ⓘ

Alternatives and complementary repositories for PAC

• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆26Updated last year
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• ZekunYin / RabbitMash
  RabbitMash: an efficient highly optimized implementation of Mash.
  ☆21Updated last year
• langmead-lab / vargas
  ☆25Updated 3 years ago
• Daniel-Liu-c0deb0t / dlb-kmer-sampling
  Optimal distance lower bound k-mer sampling.
  ☆12Updated 4 months ago
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆31Updated 2 years ago
• mohsenzakeri / Movi
  Fast and cache-efficient full-text pangenome index
  ☆25Updated this week
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆22Updated this week
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆16Updated 6 years ago
• Kmer-File-Format / kff-tools
  ☆17Updated last year
• thegenemyers / PHASE-MERS
  Utilities to detect and profile `het-kmers`
  ☆11Updated 3 months ago
• Kingsford-Group / miniception
  ☆12Updated 4 years ago
• gregorykucherov / spaced-seeds-for-metagenomics
  ☆14Updated 8 years ago
• PROBIC / mSWEEP
  mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
  ☆13Updated 3 weeks ago
• algbio / themisto
  Space-efficient pseudoalignment with a colored de Bruijn graph
  ☆50Updated last month
• jermp / fulgor
  Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆43Updated this week
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 2 years ago
• medvedevgroup / bloomtree-allsome
  Sequence Bloom Trees with All/Some split
  ☆11Updated 6 years ago
• lh3 / rmaxcut
  An experimental tool to find approximate max-cuts in a large graph
  ☆11Updated 3 years ago
• VGP / vgp-tools
  ☆28Updated last year
• rcedgar / syncmer
  Validation of sycnmers compared to minimizers
  ☆11Updated 4 years ago
• AntonBankevich / jumboDB
  De Bruijn graph construction for large k.
  ☆18Updated 3 years ago
• ratschlab / tensor-sketch-alignment
  Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.
  ☆13Updated 2 years ago
• TavorB / spectral_jaccard_similarity
  ☆14Updated last year
• Malfoy / NIQKI
  Next Index to Query Kmer Intersection
  ☆16Updated last year
• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆20Updated last week
• lh3 / pubLRasm
  ☆16Updated 3 years ago
• ekg / drawbwt
  vector illustrations of BWT based searching on small strings
  ☆16Updated 5 years ago
• hanzou666 / msa2gfa
  A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg
  ☆11Updated 5 years ago
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆43Updated last month