usnistgov / peprLinks
Pipeline for Evaluating Prokaryotic References
☆11Updated 9 years ago
Alternatives and similar repositories for pepr
Users that are interested in pepr are comparing it to the libraries listed below
Sorting:
- scripts to parse IrysView output☆11Updated 10 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Indel-aware consensus for aligned BAM☆21Updated last month
- Scaffolding of genomic assemblies with RNA seq data☆15Updated 9 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 11 months ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Tool for visualising assemblies.☆17Updated 10 years ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated this week
- HyPhy tutorials☆11Updated 7 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 8 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last week
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆10Updated last year
- ☆13Updated 9 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Falcon2Fastg is a tool for converting a FALCON assembly to FASTG format to visualize with Bandage☆13Updated 9 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- ☆15Updated 5 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Updated 3 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆11Updated 9 months ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Updated 9 years ago
- blast, shmlast☆21Updated 4 years ago