tlemane / kmtricksLinks
modular k-mer count matrix and Bloom filter construction for large read collections
☆84Updated 3 weeks ago
Alternatives and similar repositories for kmtricks
Users that are interested in kmtricks are comparing it to the libraries listed below
Sorting:
- A repository for generating strobemers and evalaution☆78Updated last year
- alignment to variation graph inducer☆149Updated 2 months ago
- BWT construction and search☆118Updated 2 months ago
- FASTX search and [host] depletion using minimizers☆83Updated last week
- Yet Another Chimeric Read Detector☆80Updated 10 months ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆66Updated last year
- ☆62Updated 3 months ago
- Pan-Genomic Matching Statistics☆53Updated last year
- Bidirectional WFA (Paper)☆47Updated last year
- Hybrid error correction of long reads using colored de Bruijn graphs☆104Updated 2 weeks ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆52Updated this week
- Compacted and colored de Bruijn graph construction and querying☆84Updated 2 weeks ago
- Split k-mer analysis – version 2☆92Updated last month
- ☆100Updated last year
- Mumemto: multi-MUM and MEM finding across pangenomes☆111Updated 2 months ago
- Efficient phylogenetic tree inference for massive taxonomic datasets☆124Updated 5 months ago
- flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.☆37Updated last year
- A fast K-mer counter for high-fidelity shotgun datasets☆130Updated this week
- ✏️ Genome assembly polishing & SNV detection☆70Updated 2 months ago
- Substring index for paths in a graph☆60Updated 4 months ago
- Efficient, parallel compression for terabyte-scale data☆48Updated 4 months ago
- A tool for Racon polishing of miniasm assemblies☆77Updated last week
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆128Updated last week
- Index kmtricks bf matrices☆45Updated last week
- 🔗Genome assembly scaffolder using minimizer graphs☆84Updated 11 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆81Updated last month
- ☆47Updated 2 years ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆88Updated 4 months ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 6 months ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆65Updated last week