tlemane / kmtricksLinks
modular k-mer count matrix and Bloom filter construction for large read collections
☆85Updated 2 weeks ago
Alternatives and similar repositories for kmtricks
Users that are interested in kmtricks are comparing it to the libraries listed below
Sorting:
- A repository for generating strobemers and evalaution☆79Updated last year
- BWT construction and search☆122Updated 2 weeks ago
- Yet Another Chimeric Read Detector☆81Updated last year
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆70Updated last year
- Split k-mer analysis – version 2☆101Updated last week
- A fast K-mer counter for high-fidelity shotgun datasets☆137Updated 3 months ago
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆103Updated last month
- Pan-Genomic Matching Statistics☆55Updated last year
- alignment to variation graph inducer☆155Updated 2 weeks ago
- Bidirectional WFA (Paper)☆48Updated last year
- ☆62Updated 3 months ago
- Assembled Genomes Compressor☆175Updated last year
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆69Updated 4 months ago
- Fast DNA search and [host] depletion using minimizers☆96Updated 3 weeks ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆134Updated 2 months ago
- Efficient phylogenetic tree inference for massive taxonomic datasets☆136Updated 8 months ago
- Efficient, parallel compression for terabyte-scale data☆55Updated 3 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 3 months ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆96Updated 7 months ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆59Updated last week
- flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.☆37Updated 2 years ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆92Updated 7 months ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated last year
- memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping☆64Updated 7 months ago
- A tool for Racon polishing of miniasm assemblies☆78Updated 3 months ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆126Updated 3 weeks ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆79Updated 3 weeks ago
- Index kmtricks bf matrices☆46Updated 2 weeks ago
- ✏️ Genome assembly polishing & SNV detection☆71Updated 2 months ago
- Fast and exact gap-affine partial order alignment☆57Updated last month