luizirber / nifflerLinks
Simple and transparent support for compressed files.
☆81Updated 10 months ago
Alternatives and similar repositories for niffler
Users that are interested in niffler are comparing it to the libraries listed below
Sorting:
- ☆50Updated 3 years ago
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆129Updated 4 years ago
- Rust bindings to minimap2 library☆101Updated 2 weeks ago
- A genomic minhashing implementation in Rust☆101Updated 5 months ago
- 🐦 spideog - Command line utility for Kraken2 reports.☆11Updated 5 years ago
- Parallel Construction of Suffix Arrays in Rust☆26Updated 7 months ago
- Light phylogeny library for Rust☆10Updated last month
- Rust bindings to parasail, a SIMD-accelerated pairwise sequence alignment library.☆21Updated 9 years ago
- FASTA and FASTQ parsing in Rust☆80Updated 8 months ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆20Updated last week
- Foundations for the Rust omics ecosystem.☆12Updated last month
- ☆22Updated 3 years ago
- Alignment-based gene expression quantification☆30Updated 3 months ago
- Rust utility code☆32Updated last year
- Rust implementation of a fast, easy, interval tree library nim-lapper☆67Updated 5 months ago
- Simple succinct data structures (in Rust)☆51Updated last year
- A very fast interval tree data structure☆124Updated 10 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- ntHash implementation in Rust☆36Updated last year
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Updated 2 years ago
- ☆12Updated 3 years ago
- ☆57Updated 3 years ago
- Rust edit distance routines accelerated using SIMD. Supports fast Hamming, Levenshtein, restricted Damerau-Levenshtein, etc. distance cal…☆109Updated 2 years ago
- A server implementation of the htsget protocol for bioinformatics in Rust☆47Updated this week
- ☆15Updated 2 weeks ago
- Fast and scalable minimal perfect hashing for massive key sets☆146Updated last year
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- Rust implmentation of VCF parser☆25Updated 3 years ago
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15Updated 7 months ago
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Updated last year