luizirber / niffler

Related projects ⓘ

Alternatives and complementary repositories for niffler

• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆72Updated 11 months ago
• aseyboldt / fastq-rs
  ☆47Updated 2 years ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆26Updated 5 months ago
• onecodex / finch-rs
  A genomic minhashing implementation in Rust
  ☆93Updated 10 months ago
• 10XGenomics / rust-toolbox
  Rust utility code
  ☆32Updated 9 months ago
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆17Updated 2 months ago
• simonpenel / light_phylogeny
  Light phylogeny API for Rust
  ☆9Updated last month
• Daniel-Liu-c0deb0t / cute-nucleotides
  Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.
  ☆116Updated 3 years ago
• informationsea / vcf-rs
  Rust implmentation of VCF parser
  ☆23Updated 2 years ago
• jeanmanguy / spideog
  🐦 spideog - Command line utility for Kraken2 reports.
  ☆11Updated 3 years ago
• onecodex / needletail
  Fast FASTX parsing and k-mer methods in Rust
  ☆174Updated 2 weeks ago
• ostnam / rust-wfa
  ☆11Updated 2 years ago
• samuell / gccontent-benchmark
  Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)
  ☆57Updated last year
• jakobnissen / alen
  Simple terminal alignment viewer
  ☆78Updated 2 months ago
• 38 / d4-format
  The D4 Quantitative Data Format
  ☆158Updated last month
• anp / parasailors
  Rust bindings to parasail, a SIMD-accelerated pairwise sequence alignment library.
  ☆21Updated 8 years ago
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆66Updated 3 months ago
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated last year
• hhandika / segul
  An ultrafast and memory efficient tool for phylogenomics
  ☆24Updated this week
• informationsea / bgzip-rs
  bgzip support for Rust
  ☆14Updated last year
• jltsiren / simple-sds
  Simple succinct data structures (in Rust)
  ☆47Updated 5 months ago
• umccr / htsget-rs
  A server implementation of the htsget protocol for bioinformatics in Rust
  ☆39Updated 2 weeks ago
• dcjones / coitrees
  A very fast interval tree data structure
  ☆111Updated 5 months ago
• luizirber / nthash
  ntHash implementation in Rust
  ☆34Updated 4 months ago
• sstadick / rust-lapper
  Rust implementation of a fast, easy, interval tree library nim-lapper
  ☆56Updated 7 months ago
• 10XGenomics / rust-boomphf
  Fast and scalable minimal perfect hashing for massive key sets
  ☆132Updated 4 months ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• COMBINE-lab / terminus
  ☆57Updated 2 years ago
• dlesl / gb-io
  A Rust library for parsing, writing and manipulating Genbank sequence files
  ☆14Updated last year
• chfi / waragraph
  ☆26Updated 7 months ago