Alternatives and similar repositories for niffler:

Users that are interested in niffler are comparing it to the libraries listed below

• aseyboldt / fastq-rs
  ☆51Updated 2 years ago
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆95Updated last week
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆77Updated last month
• informationsea / bgzip-rs
  bgzip support for Rust
  ☆16Updated last year
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆27Updated last month
• onecodex / finch-rs
  A genomic minhashing implementation in Rust
  ☆94Updated last year
• anp / parasailors
  Rust bindings to parasail, a SIMD-accelerated pairwise sequence alignment library.
  ☆22Updated 8 years ago
• jeanmanguy / spideog
  🐦 spideog - Command line utility for Kraken2 reports.
  ☆12Updated 4 years ago
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆17Updated this week
• informationsea / vcf-rs
  Rust implmentation of VCF parser
  ☆23Updated 2 years ago
• TravisWheelerLab / sufr
  Parallel Construction of Suffix Arrays in Rust
  ☆23Updated this week
• 10XGenomics / rust-toolbox
  Rust utility code
  ☆32Updated last year
• simonpenel / light_phylogeny
  Light phylogeny library for Rust
  ☆9Updated last week
• dcjones / coitrees
  A very fast interval tree data structure
  ☆117Updated 3 months ago
• luizirber / nthash
  ntHash implementation in Rust
  ☆36Updated 9 months ago
• rust-bio / rust-bio-types
  A library of common biomedical types.
  ☆37Updated 3 weeks ago
• ostnam / rust-wfa
  ☆11Updated 2 years ago
• 38 / grass
  ☆21Updated 2 years ago
• umccr / htsget-rs
  A server implementation of the htsget protocol for bioinformatics in Rust
  ☆43Updated last week
• Daniel-Liu-c0deb0t / cute-nucleotides
  Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.
  ☆122Updated 4 years ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated 10 months ago
• samuell / gccontent-benchmark
  Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)
  ☆58Updated 2 years ago
• RagnarGrootKoerkamp / rust-phylogeny
  Rust package for constructing and analyzing phylogenies.
  ☆15Updated last week
• dlesl / gb-io
  A Rust library for parsing, writing and manipulating Genbank sequence files
  ☆17Updated 2 weeks ago
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated last year
• onecodex / needletail
  Fast FASTX parsing and k-mer methods in Rust
  ☆186Updated 2 weeks ago
• COMBINE-lab / terminus
  ☆58Updated 2 years ago
• hhandika / segul
  An ultrafast and memory efficient tool for phylogenomics
  ☆25Updated last month
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆36Updated last week