luizirber / nifflerView external linksLinks
Simple and transparent support for compressed files.
☆81Feb 12, 2025Updated last year
Alternatives and similar repositories for niffler
Users that are interested in niffler are comparing it to the libraries listed below
Sorting:
- Iterate over minimizers of a DNA sequence☆31Jul 12, 2024Updated last year
- ☆21Dec 26, 2025Updated last month
- Fast FASTX parsing and k-mer methods in Rust☆209Jan 27, 2026Updated 2 weeks ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆28Apr 24, 2025Updated 9 months ago
- Benchmarking pairwise aligners☆36Feb 8, 2025Updated last year
- Rust bindings to minimap2 library☆108Feb 2, 2026Updated last week
- an API for intersections of genomic data☆142Jan 29, 2026Updated 2 weeks ago
- Parallel Construction of Suffix Arrays in Rust☆26May 2, 2025Updated 9 months ago
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated 6 months ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 3 years ago
- k-mers and the like☆22Updated this week
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 2 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆19Jan 22, 2026Updated 3 weeks ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆42Jan 9, 2026Updated last month
- Rust implementation of probminhash, superminhash and hyperloglog sketching algorithms☆31Jan 22, 2026Updated 3 weeks ago
- Convert vcf in parquet☆29Jan 23, 2025Updated last year
- String algorithm visualizations☆13Feb 7, 2023Updated 3 years ago
- expressions on VCFs☆91Apr 19, 2025Updated 9 months ago
- GFA parser in Rust☆30May 26, 2023Updated 2 years ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- ☆18Nov 21, 2024Updated last year
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Apr 23, 2021Updated 4 years ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- A very fast interval tree data structure☆130Feb 3, 2025Updated last year
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Nov 18, 2023Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 4 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated last year
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- A long read simulator based on badread idea☆22Oct 7, 2022Updated 3 years ago
- Bioinformatics I/O libraries in Rust☆650Feb 8, 2026Updated last week
- Fast interval intersection library☆44Aug 20, 2025Updated 5 months ago
- ☆24Apr 2, 2021Updated 4 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆24Updated this week
- Grep for FASTQ files☆103Dec 17, 2025Updated last month
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year