ocxtal / adaptivebandbenchLinks
Benchmark on adaptive banded algorithm
☆20Updated 2 years ago
Alternatives and similar repositories for adaptivebandbench
Users that are interested in adaptivebandbench are comparing it to the libraries listed below
Sorting:
- ☆28Updated 3 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆43Updated last year
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- Adaptive semi-global banded alignment on string graphs☆67Updated 7 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 6 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- Graph based multi genome aligner☆47Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- my PhD thesis☆36Updated 6 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆17Updated 7 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- Tumour-only somatic mutation calling using long reads☆27Updated 8 months ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated last month
- Lift-over alignments from variant-aware references☆35Updated 2 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- Python bindings to minimap2☆16Updated 7 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆35Updated 2 years ago
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆14Updated 9 years ago
- Example of SGTK application for E.coli dataset:☆32Updated 5 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago