ocxtal / adaptivebandbenchLinks
Benchmark on adaptive banded algorithm
☆19Updated 2 years ago
Alternatives and similar repositories for adaptivebandbench
Users that are interested in adaptivebandbench are comparing it to the libraries listed below
Sorting:
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 6 months ago
- Adaptive semi-global banded alignment on string graphs☆66Updated 7 years ago
- de Bruijn Graph-based read aligner☆35Updated 7 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- ☆28Updated 10 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 5 months ago
- Segmental Duplication Assembler (SDA).☆43Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 4 months ago
- Example of SGTK application for E.coli dataset:☆31Updated 5 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- Graph based multi genome aligner☆49Updated 4 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 9 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆18Updated 8 years ago
- ☆67Updated last year
- Code for building and testing variant ranking strategies☆17Updated 5 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Updated 2 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- ☆21Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Updated 6 years ago
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Updated 6 years ago
- 10x Genomics Reads Simulator☆46Updated 2 years ago
- Linked-Read Alignment Tool☆26Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆59Updated 5 months ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 7 months ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago