ocxtal / adaptivebandbench
Benchmark on adaptive banded algorithm
☆20Updated last year
Alternatives and similar repositories for adaptivebandbench:
Users that are interested in adaptivebandbench are comparing it to the libraries listed below
- Adaptive semi-global banded alignment on string graphs☆65Updated 6 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- ☆28Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆15Updated 9 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 7 months ago
- ☆64Updated 9 months ago
- ☆34Updated 4 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆34Updated 2 years ago
- ☆15Updated 4 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆16Updated 5 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆35Updated last week
- Convert HAL to VG☆21Updated 5 months ago
- Tumour-only somatic mutation calling using long reads☆25Updated 2 months ago
- A long read simulator based on badread idea☆20Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last year
- genome variation graphs constructed from HLA GRCh38 ALTs☆22Updated 3 years ago
- ☆29Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago