seqan / raptor

Related projects ⓘ

Alternatives and complementary repositories for raptor

• maickrau / MBG
  ☆57Updated 2 weeks ago
• morispi / CONSENT
  Scalable long read self-correction and assembly polishing with multiple sequence alignment
  ☆55Updated 9 months ago
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆57Updated 3 months ago
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆51Updated 2 years ago
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆64Updated last year
• ksahlin / strobemers
  A repository for generating strobemers and evalaution
  ☆77Updated 7 months ago
• bcgsc / LongStitch
  Correct and scaffold assemblies using long reads
  ☆47Updated last year
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated 4 months ago
• will-rowe / hulk
  Histosketching Using Little Kmers
  ☆55Updated last year
• vgteam / libhandlegraph
  Library for the Handle Graph abstraction
  ☆21Updated 4 months ago
• esteinig / sketchy
  Genomic neighbor typing of bacterial pathogens using MinHash
  ☆44Updated last year
• katerinakazantseva / strainy
  Graph-based assembly phasing
  ☆66Updated 3 weeks ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆96Updated last month
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆35Updated last year
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 7 months ago
• vpc-ccg / haslr
  A fast tool for hybrid genome assembly of long and short reads
  ☆76Updated 4 years ago
• VGP / vgp-tools
  ☆28Updated last year
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆116Updated 2 weeks ago
• pangenome / smoothxg
  linearize and simplify variation graphs using blocked partial order alignment
  ☆56Updated this week
• phac-nml / refseq_masher
  Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database
  ☆39Updated 3 years ago
• mourisl / centrifuger
  Classifier for metagenomic sequences using FM-index with run-block compressed BWT.
  ☆51Updated this week
• a-ludi / dentist
  Close assembly gaps using long-reads at high accuracy.
  ☆47Updated 9 months ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆47Updated 5 years ago
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆33Updated 3 years ago
• lemene / PECAT
  PECAT, a phased error correct and assembly tool
  ☆39Updated last week
• jean-pierreBoth / gsearch
  Approximate nearest neighbour search for microbial genomes based on hash metric
  ☆43Updated last week
• jermp / fulgor
  Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆44Updated this week
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆31Updated last month
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆93Updated 2 years ago
• neherlab / pangraph
  A bioinformatic toolkit to align genome assemblies into pangenome graphs
  ☆90Updated 2 weeks ago