A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
☆53Mar 30, 2026Updated last week
Alternatives and similar repositories for raptor
Users that are interested in raptor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- REINDEER REad Index for abuNDancE quERy☆56Jul 6, 2025Updated 9 months ago
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- De Bruijn graph representation in low memory☆35Jul 6, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- An efficient index for the colored, compacted, de Bruijn graph☆111Mar 11, 2026Updated last month
- Minimum Bait Cover Toolkit Syotti.☆15Jan 22, 2025Updated last year
- ☆14Oct 14, 2020Updated 5 years ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆91Feb 26, 2026Updated last month
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆53Mar 13, 2025Updated last year
- Pan-Genomic Matching Statistics☆55Apr 3, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 6 years ago
- Histosketching Using Little Kmers☆57May 25, 2023Updated 2 years ago
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆105Apr 3, 2026Updated last week
- Reference-free variant discovery in large eukaryotic genomes☆42Jul 13, 2021Updated 4 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Nov 27, 2025Updated 4 months ago
- ☆19Nov 21, 2024Updated last year
- ntHash implementation in Rust☆36Jul 12, 2024Updated last year
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆88Jan 25, 2024Updated 2 years ago
- Library of sketching functions used by PopPUNK☆31Mar 31, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆10Feb 23, 2024Updated 2 years ago
- MONI: A Pangenomic Index for Finding MEMs☆37Mar 25, 2025Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated this week
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 3 years ago
- MetaProFi is a bloom filter based tool for storing and querying sequence data for accurate identification of functionally relevant geneti…☆13Apr 14, 2022Updated 3 years ago
- Paired reads mapping on de Bruijn graph☆13Jan 15, 2019Updated 7 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆50Apr 1, 2026Updated last week
- A repository for generating strobemers and evalaution☆79Apr 16, 2024Updated last year
- ☆14Jan 31, 2020Updated 6 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Jul 9, 2021Updated 4 years ago
- Fast and accurate set similarity estimation via containment min hash☆42Jul 19, 2024Updated last year
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 4 years ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆97May 20, 2025Updated 10 months ago