Alternatives and similar repositories for raptor

Users that are interested in raptor are comparing it to the libraries listed below

• jermp / fulgor
  ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆59Updated this week
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆36Updated 3 years ago
• lh3 / partig
  An experimental tool to estimate the similarity between all pairs of contigs
  ☆40Updated 4 years ago
• tlemane / kmindex
  Index kmtricks bf matrices
  ☆46Updated last month
• VGP / vgp-tools
  ☆28Updated 10 months ago
• jean-pierreBoth / gsearch
  Approximate nearest neighbour search for microbial genomes based on hash metric
  ☆57Updated last month
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆28Updated 9 months ago
• smarco / BiWFA-paper
  Bidirectional WFA (Paper)
  ☆48Updated last year
• dnbaker / dashing2
  Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.
  ☆70Updated last year
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated last year
• sourmash-bio / sourmash_plugin_branchwater
  fast, multithreaded sourmash operations: search, compare, and gather.
  ☆25Updated last week
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆34Updated 3 years ago
• vgteam / libbdsg
  Optimized sequence graph implementations for graph genomics
  ☆34Updated this week
• maickrau / MBG
  ☆62Updated 4 months ago
• zhaoxiaofei / bindash
  Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop
  ☆72Updated 6 months ago
• bacpop / pp-sketchlib
  Library of sketching functions used by PopPUNK
  ☆31Updated 10 months ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• ksahlin / strobemers
  A repository for generating strobemers and evalaution
  ☆79Updated last year
• kcleal / pywfa
  Python wrapper for wavefront alignment using WFA2-lib
  ☆38Updated last year
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆56Updated 7 months ago
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆55Updated 3 years ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆30Updated 2 years ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆45Updated 6 months ago
• biointec / browniealigner
  Alignment algorithm for short Illumina reads to a de Bruijn graph
  ☆17Updated 6 years ago
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆55Updated last year
• natir / rustyread
  A long read simulator based on badread idea
  ☆22Updated 3 years ago
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆34Updated 5 years ago
• taxburst / taxburst
  sunburst plots for taxonomy - working to update Krona
  ☆44Updated 4 months ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago