kuleshov / architectLinks
Scaffolding genomes using synthetic long read clouds
☆20Updated 8 years ago
Alternatives and similar repositories for architect
Users that are interested in architect are comparing it to the libraries listed below
Sorting:
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- de Bruijn Graph-based read aligner☆33Updated 7 years ago
- ☆34Updated 5 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- ☆21Updated 5 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- ☆28Updated 5 months ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆57Updated 3 weeks ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 2 weeks ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- ☆15Updated 5 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 3 months ago
- Alignment-based Scrubbing pipeline☆21Updated last year
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Updated 8 years ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- GFA insert into GenomicSQLite☆48Updated 4 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Updated last year