kuleshov / architect
Scaffolding genomes using synthetic long read clouds
☆20Updated 8 years ago
Related projects ⓘ
Alternatives and complementary repositories for architect
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- ☆28Updated last year
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 4 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆21Updated 4 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Fast in-silico normalization algorithm for NGS data☆22Updated 3 years ago
- A python package from Pacific Biosciences to analyze centromeric sequences☆21Updated 9 years ago
- ☆34Updated 4 years ago
- A long-read analysis toolbox for cancer and population genomics☆20Updated 7 months ago
- Alignment-based Scrubbing pipeline☆20Updated 7 months ago
- Scaffolding with assembly likelihood optimization☆20Updated 3 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Read nanopore sequence reads in real-time☆14Updated 7 years ago
- Convert HAL to VG☆21Updated 2 months ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- Method to optimally select samples for validation and resequencing☆26Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆29Updated 3 years ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Updated last month
- ☆15Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 6 months ago
- ☆21Updated 5 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Updated 8 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 3 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Scaffolding with Ultralong Reads☆14Updated 3 years ago
- recompute GFA link overlaps☆25Updated 2 years ago