sourmash-bio / wortLinks
A database for signatures of public genomic sources
☆18Updated this week
Alternatives and similar repositories for wort
Users that are interested in wort are comparing it to the libraries listed below
Sorting:
- ☆16Updated last year
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated last week
- Fast viral consensus genome reconstruction☆25Updated 5 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 10 months ago
- NCBI Pathogen Detection Portal toolkit☆11Updated 2 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 9 months ago
- Finding prophage regions in bacterial genomes using brute force☆22Updated 2 years ago
- Simple-to-use interactive comparison of two bacterial genomes☆18Updated last week
- software to identify primers that can distinguish genomes☆20Updated 3 weeks ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Updated 4 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆43Updated 2 years ago
- Sketch-based surveillance platform☆13Updated last year
- Non-redundant pangenome assemblies from multiple genomes or bins☆14Updated 7 months ago
- A novel method for sequence similarity estimation☆28Updated last year
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆33Updated this week
- metagenome population recombination rate estimation pipeline☆12Updated 3 weeks ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆18Updated 4 months ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆17Updated last week
- Visualize microbial evolution at the SNP level!☆15Updated 4 months ago
- Indel-aware consensus for aligned BAM☆21Updated 4 months ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Updated last month
- Variant call verification☆16Updated 7 months ago
- Basecalling configuration prediction through FASTQ files☆32Updated 3 weeks ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Updated last year
- sunburst plots for taxonomy - working to update Krona☆41Updated 2 months ago
- Get microbial sequence data easier and faster☆28Updated 6 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆59Updated 8 months ago