sourmash-bio / wort
A database for signatures of public genomic sources
☆18Updated 2 weeks ago
Alternatives and similar repositories for wort:
Users that are interested in wort are comparing it to the libraries listed below
- ☆16Updated last year
- fast, multithreaded sourmash operations: search, compare, and gather.☆21Updated this week
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated 3 weeks ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 3 weeks ago
- software to identify primers that can distinguish genomes☆21Updated 3 weeks ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆21Updated 2 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated this week
- A pipeline for bioinformatics analysis of bacterial genomes☆19Updated 7 months ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Updated 6 months ago
- NCBI Pathogen Detection Portal toolkit☆11Updated last year
- Code to create a PRG from a Multiple Sequence Alignment file☆23Updated 10 months ago
- Fast viral consensus genome reconstruction☆22Updated 2 months ago
- Variant call verification☆16Updated last month
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Library of sketching functions used by PopPUNK☆30Updated last month
- Sketch-based surveillance platform☆13Updated 2 months ago
- k-mers and the like☆21Updated this week
- Visualize microbial evolution at the SNP level!☆14Updated 3 months ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆19Updated 9 months ago
- Build sourmash databases for genbank.☆12Updated last year
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 3 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Paint genomes with taxa-specific k-mer probabilities☆8Updated 6 years ago
- Genome size estimation from long read overlaps☆48Updated 2 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆27Updated 10 months ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- Finding prophage regions in bacterial genomes using brute force☆22Updated 2 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- Resolving Species Level Classification Using Emu☆12Updated 8 months ago