sourmash-bio / wortLinks
A database for signatures of public genomic sources
☆18Updated 3 months ago
Alternatives and similar repositories for wort
Users that are interested in wort are comparing it to the libraries listed below
Sorting:
- ☆16Updated last year
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated last month
- software to identify primers that can distinguish genomes☆21Updated 5 months ago
- Quickly get coverage statistics given reads and an assembly☆13Updated last year
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Updated 9 months ago
- Finding prophage regions in bacterial genomes using brute force☆22Updated 2 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 4 months ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆19Updated last year
- fast, multithreaded sourmash operations: search, compare, and gather.☆23Updated this week
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated last month
- NCBI Pathogen Detection Portal toolkit☆11Updated last year
- Sketch-based surveillance platform☆13Updated 6 months ago
- Fast viral consensus genome reconstruction☆23Updated 3 weeks ago
- Visualize microbial evolution at the SNP level!☆14Updated last month
- ☆16Updated this week
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Updated 10 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆25Updated 7 months ago
- A long read simulator based on badread idea☆22Updated 2 years ago
- Library of sketching functions used by PopPUNK☆31Updated 2 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last week
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆18Updated 6 months ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆14Updated last year
- A tool to detect acquired AMR genes directly from long read sequencing data.☆16Updated last week
- Fast and space-efficient taxonomic classification of long reads☆43Updated last month
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- Organism-specific interpretation of AMR genotypes☆13Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 3 months ago