will-rowe / hulkLinks
Histosketching Using Little Kmers
☆56Updated 2 years ago
Alternatives and similar repositories for hulk
Users that are interested in hulk are comparing it to the libraries listed below
Sorting:
- REINDEER REad Index for abuNDancE quERy☆56Updated 4 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 3 months ago
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆69Updated 3 months ago
- Find Unique genomic Regions☆32Updated 3 weeks ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Pan-Genomic Matching Statistics☆54Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 3 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65Updated 5 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- online notebooks for a review of genome sketching☆60Updated 6 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.☆21Updated 7 years ago
- ☆14Updated 2 years ago
- Extract lineage CSVs from NCBI for use with sourmash lca.☆29Updated 2 years ago
- ☆30Updated 2 years ago
- ☆28Updated 7 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Index kmtricks bf matrices☆45Updated last month
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆50Updated 3 years ago
- Get microbial sequence data easier and faster☆28Updated 6 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Updated 2 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Updated 4 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 2 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago