isovic / raptorLinks
Graph-based mapping of long sequences, noisy or HiFi.
☆55Updated 5 years ago
Alternatives and similar repositories for raptor
Users that are interested in raptor are comparing it to the libraries listed below
Sorting:
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- Pan-Genomic Matching Statistics☆53Updated last year
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆70Updated 6 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 4 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- ☆35Updated 5 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated last year
- A streaming method for mapping nanopore raw signals☆32Updated 3 years ago
- TGS scaffolding☆47Updated 3 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 3 months ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- ☆46Updated 5 years ago
- ☆66Updated last month
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Updated 4 years ago
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆64Updated 5 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Updated 3 years ago
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆45Updated 2 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- A tool for Racon polishing of miniasm assemblies☆78Updated last month
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆67Updated last year
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- ✏️ Genome assembly polishing & SNV detection☆70Updated 3 weeks ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆69Updated last year
- ☆79Updated 5 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 2 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆114Updated 2 weeks ago
- Statistics and analysis for variation graphs☆45Updated 10 months ago