nh13 / fqme
☆22Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for fqme
- Hidden Markov Model based Copy number caller☆20Updated 2 weeks ago
- The python binding for D4 format☆16Updated 3 years ago
- Variant call adjudication☆16Updated 4 months ago
- Index and query k-mer matrices in BGZF☆12Updated 6 years ago
- ☆12Updated 3 years ago
- Detects human contamination in bam files☆16Updated 4 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated last month
- maze: match visualizer☆9Updated 3 years ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- ☆9Updated 2 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆16Updated this week
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- Genome assembly quality improvement assisted by alternative assemblies and paired-end Illumina reads☆7Updated 5 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- convert CHAIN format to PAF format☆13Updated 6 months ago
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 2 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last week
- ☆12Updated last week
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆14Updated last month
- drunk on perbase pileups and lua expressions☆17Updated last year
- Linear-time, low-memory construction of variation graphs☆18Updated 4 years ago
- Pan gGnome Viewer☆10Updated 8 months ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆28Updated last week
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆10Updated 10 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago