☆21Dec 26, 2025Updated 6 months ago
Alternatives and similar repositories for fqme
Users that are interested in fqme are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Analyzing RNA-Seq with approximate likelihood☆26Dec 13, 2020Updated 5 years ago
- ☆57Aug 11, 2022Updated 3 years ago
- Rust implementation of the Haskell Rampart library that determines how intervals relate to each other.☆11Apr 21, 2022Updated 4 years ago
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆27Jun 25, 2026Updated 3 weeks ago
- PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using …☆30Jul 1, 2026Updated 3 weeks ago
- BUS format specification☆13Nov 18, 2019Updated 6 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆20Jun 13, 2022Updated 4 years ago
- Catalogue of pairwise alignment algorithms and benchmarks☆26Jan 6, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated 2 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated last week
- A rust implementation of STAR☆52Jul 3, 2026Updated 2 weeks ago
- Simple and transparent support for compressed files.☆81Jul 1, 2026Updated 3 weeks ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆22Jan 22, 2026Updated 6 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆27Jun 16, 2026Updated last month
- Rust in bioinformatics and computational biology☆19Oct 22, 2022Updated 3 years ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Mar 13, 2025Updated last year
- An optimal space run-length Burrows-Wheeler transform full-text index☆27Oct 28, 2021Updated 4 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated 2 years ago
- ☆19Jul 15, 2026Updated last week
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆45Jul 16, 2026Updated last week
- an API for intersections of genomic data☆148Mar 12, 2026Updated 4 months ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Parallelized zip archive reading☆37Dec 24, 2024Updated last year
- GBWT-based handle graph☆35Jun 17, 2026Updated last month
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Apr 1, 2019Updated 7 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- Fast interval intersection library☆45Jul 14, 2026Updated last week