csirac / dynamicDBG

Related projects ⓘ

Alternatives and complementary repositories for dynamicDBG

• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• medvedevgroup / UST
  ☆25Updated 3 years ago
• luizirber / ukhs
  Universal K-mer Hitting Set library in Rust
  ☆10Updated 4 years ago
• medvedevgroup / TwoPaCo
  A fast constructor of the compressed de Bruijn graph from many genomes
  ☆40Updated 2 years ago
• ekg / drawbwt
  vector illustrations of BWT based searching on small strings
  ☆16Updated 5 years ago
• Malfoy / Blight
  De Bruijn graph representation in low memory
  ☆36Updated 4 months ago
• mkirsche / sapling
  SAPLING: Suffix Array Piecewise Linear INdex for Genomics
  ☆25Updated 4 years ago
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆35Updated last year
• cosmo-team / cosmo
  Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
  ☆51Updated 7 months ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆16Updated 6 years ago
• langmead-lab / vargas
  ☆25Updated 3 years ago
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆26Updated last year
• gregorykucherov / spaced-seeds-for-metagenomics
  ☆14Updated 8 years ago
• lh3 / rmaxcut
  An experimental tool to find approximate max-cuts in a large graph
  ☆11Updated 3 years ago
• Malfoy / Miekki
  Minhash Index Extended to Knead Kmer Intersection
  ☆11Updated 4 years ago
• VGP / vgp-tools
  ☆28Updated last year
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆31Updated 2 years ago
• isovic / minialign
  Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.
  ☆10Updated 7 years ago
• cdarby / genomicsjc
  Johns Hopkins University student-led genomics paper discussion group
  ☆13Updated 4 years ago
• natir / nuc2bit
  ☆14Updated 4 years ago
• rvaser / rala
  Layout module for raw de novo genome assembly of long uncorrected reads.
  ☆21Updated 3 years ago
• Kmer-File-Format / kff-tools
  ☆17Updated last year
• algbio / themisto
  Space-efficient pseudoalignment with a colored de Bruijn graph
  ☆50Updated last month
• Malfoy / NIQKI
  Next Index to Query Kmer Intersection
  ☆16Updated last year
• jermp / fulgor
  Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆43Updated this week
• ocxtal / comb
  comb aligner -- a graphical nucleotide sequence alignment tool
  ☆9Updated 8 years ago
• biointec / browniealigner
  Alignment algorithm for short Illumina reads to a de Bruijn graph
  ☆16Updated 5 years ago
• COMBINE-lab / rainbowfish
  A succinct colored dBG representation
  ☆12Updated 6 years ago
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆22Updated this week
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated 5 months ago