csirac / dynamicDBG
Practical Dynamic de Bruijn Graphs
☆18Updated 4 years ago
Alternatives and similar repositories for dynamicDBG:
Users that are interested in dynamicDBG are comparing it to the libraries listed below
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆40Updated 2 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆51Updated 10 months ago
- ☆25Updated 3 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 3 years ago
- FM-index representation of a de Bruijn graph☆27Updated 7 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- vector illustrations of BWT based searching on small strings☆16Updated 5 years ago
- ☆25Updated 3 years ago
- De Bruijn graph representation in low memory☆36Updated 6 months ago
- Parallel Sequence to Graph Alignment☆35Updated 2 years ago
- Universal K-mer Hitting Set library in Rust☆10Updated 4 years ago
- Pan-genome Seed Index☆19Updated 10 months ago
- ☆14Updated 8 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆16Updated 5 years ago
- A succinct colored dBG representation☆12Updated 6 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated last year
- comb aligner -- a graphical nucleotide sequence alignment tool☆9Updated 8 years ago
- StriDe Assembler☆25Updated 7 years ago
- ☆28Updated last year
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated last month
- ☆12Updated 5 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 3 years ago
- Fast and accurate set similarity estimation via containment min hash☆42Updated 6 months ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 7 years ago
- ☆17Updated last year
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- Johns Hopkins University student-led genomics paper discussion group☆13Updated 4 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated 10 months ago