Alternatives and similar repositories for lphash:

Users that are interested in lphash are comparing it to the libraries listed below

• jermp / fulgor
  Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆49Updated this week
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated 10 months ago
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 3 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• mohsenzakeri / Movi
  Fast and cache-efficient full-text pangenome index
  ☆27Updated 3 weeks ago
• Kmer-File-Format / kff-tools
  ☆17Updated last year
• OndrejSladky / fmsi
  FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform
  ☆20Updated 2 months ago
• lh3 / rmaxcut
  An experimental tool to find approximate max-cuts in a large graph
  ☆11Updated 3 years ago
• medvedevgroup / UST
  ☆25Updated 4 years ago
• VGP / vgp-tools
  ☆28Updated last week
• mkirsche / sapling
  SAPLING: Suffix Array Piecewise Linear INdex for Genomics
  ☆25Updated 4 years ago
• rob-p / FQFeeder
  Self-contained, multi-threaded fasta/q parser
  ☆43Updated 6 months ago
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆24Updated last month
• ddiazdom / lcg
  Efficient, parallel compression for terabyte-scale data
  ☆43Updated 3 months ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated 10 months ago
• alshai / Big-BWT
  modified from gitlab.com/manzai/Big-BWT to support fasta files
  ☆9Updated 2 months ago
• algbio / themisto
  Space-efficient pseudoalignment with a colored de Bruijn graph
  ☆53Updated last month
• langmead-lab / vargas
  ☆25Updated 3 years ago
• algbio / SBWT
  Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)
  ☆24Updated last month
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆54Updated 2 years ago
• vgteam / libbdsg
  Optimized sequence graph implementations for graph genomics
  ☆34Updated 4 months ago
• lh3 / lv89
  C implementation of the Landau-Vishkin algorithm
  ☆35Updated 3 years ago
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆35Updated 2 years ago
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆32Updated 2 years ago
• maxrossi91 / moni
  MONI: A Pangenomic Index for Finding MEMs
  ☆37Updated 3 weeks ago
• ekg / drawbwt
  vector illustrations of BWT based searching on small strings
  ☆16Updated 5 years ago
• cartoonist / kseqpp
  Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)
  ☆47Updated last year
• ddiazdom / grlBWT
  Efficient construction of the BWT using string compression
  ☆17Updated 6 months ago
• Daniel-Liu-c0deb0t / dlb-kmer-sampling
  Optimal distance lower bound k-mer sampling.
  ☆12Updated 10 months ago
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆44Updated 6 months ago