Alternatives and similar repositories for lphash

Users that are interested in lphash are comparing it to the libraries listed below

• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆25Updated 3 months ago
• medvedevgroup / UST
  ☆25Updated 4 years ago
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 3 years ago
• langmead-lab / vargas
  ☆25Updated 4 years ago
• jermp / fulgor
  ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆52Updated last week
• mohsenzakeri / Movi
  Fast and cache-efficient full-text pangenome index
  ☆29Updated 2 weeks ago
• ddiazdom / lcg
  Efficient, parallel compression for terabyte-scale data
  ☆48Updated 2 months ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago
• lh3 / rmaxcut
  An experimental tool to find approximate max-cuts in a large graph
  ☆11Updated 4 years ago
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆25Updated last year
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆32Updated 2 years ago
• medvedevgroup / TwoPaCo
  A fast constructor of the compressed de Bruijn graph from many genomes
  ☆41Updated 6 months ago
• VGP / vgp-tools
  ☆28Updated 3 months ago
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆37Updated 2 years ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆50Updated last year
• Kmer-File-Format / kff-tools
  ☆17Updated 2 years ago
• rvaser / rala
  Layout module for raw de novo genome assembly of long uncorrected reads.
  ☆21Updated 4 years ago
• ddiazdom / grlBWT
  Efficient construction of the BWT using string compression
  ☆18Updated 2 months ago
• Malfoy / Blight
  De Bruijn graph representation in low memory
  ☆36Updated last year
• Daniel-Liu-c0deb0t / dlb-kmer-sampling
  Optimal distance lower bound k-mer sampling.
  ☆12Updated last year
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated 2 years ago
• natir / nuc2bit
  ☆14Updated 4 years ago
• ratschlab / tensor-sketch-alignment
  Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.
  ☆13Updated 2 years ago
• algbio / themisto
  Space-efficient pseudoalignment with a colored de Bruijn graph
  ☆53Updated 4 months ago
• mkirsche / sapling
  SAPLING: Suffix Array Piecewise Linear INdex for Genomics
  ☆25Updated 4 years ago
• rob-p / FQFeeder
  Self-contained, multi-threaded fasta/q parser
  ☆45Updated 10 months ago
• algbio / SBWT
  Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)
  ☆24Updated 4 months ago
• vgteam / libhandlegraph
  Library for the Handle Graph abstraction
  ☆23Updated last month
• vgteam / libbdsg
  Optimized sequence graph implementations for graph genomics
  ☆34Updated 2 weeks ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆16Updated 6 years ago