Alternatives and similar repositories for BESST_RNA

Users that are interested in BESST_RNA are comparing it to the libraries listed below

• hillerlab / IterativeErrorCorrection
  Iterative error correction of long reads
  ☆13Updated 2 years ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆21Updated 4 years ago
• usnistgov / pepr
  Pipeline for Evaluating Prokaryotic References
  ☆11Updated 9 years ago
• mchaisso / mcutils
  ☆12Updated 2 weeks ago
• photocyte / plot_mitochondrial_genome_with_CIRCOS
  ☆15Updated 7 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated last year
• svm-zhang / AGOUTI
  Annotated Genome Optimization Using Transcriptome Information
  ☆20Updated 5 years ago
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 5 years ago
• uio-bmi / NucBreak
  Location of structural errors in a genome assembly and structural variations between a pair of genomes
  ☆11Updated 5 years ago
• SchulzLab / ORNA
  Fast in-silico normalization algorithm for NGS data
  ☆23Updated 3 years ago
• BrendelGroup / AEGeAn
  Integrated toolkit for analysis and evaluation of annotated genomes
  ☆25Updated last month
• karel-brinda / samsift
  SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
  ☆23Updated last week
• fritzsedlazeck / sge_mummer
  Scripts to split reference and run mummer in parallel on an SGE cluster
  ☆11Updated 8 years ago
• vice87 / gam-ngs
  Genomic Assemblies Merger for NGS
  ☆26Updated last year
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated last month
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated last year
• kstatebioinfo / Irys-scaffolding
  scripts to parse IrysView output
  ☆11Updated 10 years ago
• splicebox / PsiCLASS
  Simultaneous multi-sample transcript assembler for RNA-seq data
  ☆17Updated 9 months ago
• wen-biao / OM-HiC-scaffolding
  Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data
  ☆20Updated 5 years ago
• benoukraflab / NanoVar---archived
  Archived version 1.0.2
  ☆16Updated 5 years ago
• jengelmann / FastqPuri
  fastq quality assessment and filtering tool
  ☆18Updated 2 years ago
• mreppell / Karp
  Accurate and fast taxonomic classification using pseudoaligning
  ☆21Updated 8 years ago
• KiddLab / QuicK-mer2
  ☆11Updated 2 years ago
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• alshai / rowbowt
  run-length BWT tools for genomic sequences
  ☆19Updated 3 years ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆15Updated 7 years ago
• hanzou666 / msa2gfa
  A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg
  ☆11Updated 6 years ago
• Malfoy / BCOOL
  de Bruijn graph cOrrectiOn from graph aLignment
  ☆11Updated 5 years ago
• bcgsc / ntHits
  Identifying repeats in high-throughput sequencing data
  ☆16Updated last year
• antrec / spectrassembler
  Tool (experimental) to compute layout from overlaps with spectral algorithm
  ☆11Updated 7 years ago