Scaffolding of genomic assemblies with RNA seq data
☆15Oct 8, 2015Updated 10 years ago
Alternatives and similar repositories for BESST_RNA
Users that are interested in BESST_RNA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 3 years ago
- Manipulate FASTA files☆29Aug 26, 2014Updated 11 years ago
- Scaffolding with RNA-seq read alignment☆21Jul 10, 2018Updated 8 years ago
- TULIP - The Uncorrected Long read Itegration Pipeline☆27Jan 15, 2018Updated 8 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- A tool to analyze synteny at the protein level.☆14Mar 28, 2018Updated 8 years ago
- HyPhy tutorials☆11Apr 9, 2018Updated 8 years ago
- ☆18Nov 16, 2015Updated 10 years ago
- ☆19Nov 2, 2018Updated 7 years ago
- scripts to parse IrysView output☆11Jun 24, 2015Updated 11 years ago
- Reproducible Phylogenomics☆22Jun 28, 2016Updated 10 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Mar 5, 2018Updated 8 years ago
- ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads☆15Apr 30, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A box of genomics tools☆22Jun 10, 2026Updated last month
- de novo targeted gene assembly☆22Apr 16, 2021Updated 5 years ago
- expVIP. EXPression and VIsualisation Platform☆17Mar 8, 2023Updated 3 years ago
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆67Jul 23, 2020Updated 6 years ago
- (check out instaGRAAL for a faster, updated program!) This program is from Marie-Nelly et al., Nature Communications, 2014 (High-qualit…☆15Nov 22, 2022Updated 3 years ago
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- An MPI Toolkit for large-scale genomic analysis☆16Feb 29, 2016Updated 10 years ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- A new algorithm for scaffolding☆10Sep 18, 2018Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Dec 13, 2023Updated 2 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Mar 28, 2017Updated 9 years ago
- Fast big data XML parser and library, written in Ruby☆18Sep 16, 2015Updated 10 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆73Jun 4, 2026Updated last month
- Tools for working with second gen assemblies, fasta sequences, etc☆95Sep 8, 2016Updated 9 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆23May 29, 2018Updated 8 years ago
- ☆20Oct 13, 2014Updated 11 years ago
- Simple convertor from bam to FASTQ☆27Jun 30, 2015Updated 11 years ago
- A small program that glues together other programs allowing a user to input a codon alignment in FASTA format and produce an annotated ph…☆18Jan 14, 2015Updated 11 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Aug 1, 2025Updated 11 months ago
- Code and files used in teaching and training courses.☆31Nov 25, 2016Updated 9 years ago
- Homebrew/science is deprecated☆11Jan 2, 2018Updated 8 years ago
- Genome Annotation for the Masses☆36Jul 9, 2017Updated 9 years ago
- FAST: Fast Analysis of Sequences Toolbox☆32Oct 18, 2019Updated 6 years ago
- Scaffolding genomes using synthetic long read clouds☆20Oct 11, 2016Updated 9 years ago
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Mar 13, 2017Updated 9 years ago