RUSH-LAB / RAMBO
☆20Updated 4 years ago
Alternatives and similar repositories for RAMBO:
Users that are interested in RAMBO are comparing it to the libraries listed below
- Minhash Index Extended to Knead Kmer Intersection☆11Updated 5 years ago
- ☆12Updated last year
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 3 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 2 years ago
- ☆10Updated 4 years ago
- ☆13Updated 5 years ago
- DartMinHash: Fast Sketching for Weighted Sets☆13Updated 4 years ago
- C++ library for parsing several formats in bioinformatics☆9Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- ☆9Updated 2 years ago
- ☆18Updated 6 years ago
- A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences☆14Updated this week
- Optimal distance lower bound k-mer sampling.☆12Updated 9 months ago
- nimble aligner that will map your reads to the references on a laptop☆12Updated 7 years ago
- Code accompanying the publication for compressed graph annotation☆13Updated 6 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11Updated 7 years ago
- SeqOthello supports fast coverage query and containment query.☆12Updated 5 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- DAGChainer - colinear chaining between a sequence and a DAG☆10Updated 6 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Simple and fast MinHash implementation in C with Python wrapper☆13Updated 4 years ago
- Hardware go brrr bounded context suffix array construction algorithm☆18Updated last year
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 5 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- ☆12Updated 5 years ago
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆13Updated 5 years ago
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Updated 7 months ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Updated 3 years ago
- Universal K-mer Hitting Set library in Rust☆10Updated 4 years ago