☆20Aug 18, 2020Updated 5 years ago
Alternatives and similar repositories for RAMBO
Users that are interested in RAMBO are comparing it to the libraries listed below
Sorting:
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 5 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- ☆24Apr 2, 2021Updated 4 years ago
- ☆12Sep 7, 2019Updated 6 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- SetSketch: Filling the Gap between MinHash and HyperLogLog☆49Aug 11, 2021Updated 4 years ago
- ☆15Mar 9, 2018Updated 7 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50May 22, 2024Updated last year
- BagMinHash - Minwise Hashing Algorithm for Weighted Sets☆26Aug 26, 2020Updated 5 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Mar 22, 2021Updated 4 years ago
- An efficient index for the colored, compacted, de Bruijn graph☆111Oct 7, 2024Updated last year
- ☆18Nov 21, 2024Updated last year
- Fast and accurate set similarity estimation via containment min hash☆42Jul 19, 2024Updated last year
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated 9 months ago
- Graph-based mapping of long sequences, noisy or HiFi.☆55Oct 5, 2020Updated 5 years ago
- Fast and accurate genomic distances using HyperLogLog☆163Jan 19, 2023Updated 3 years ago
- Histosketching Using Little Kmers☆56May 25, 2023Updated 2 years ago
- C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings☆158Jul 23, 2024Updated last year
- Pan-genome Seed Index☆20Mar 12, 2025Updated 11 months ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- ☆10Jun 16, 2022Updated 3 years ago
- An experimental tool to find approximate max-cuts in a large graph☆10Apr 28, 2021Updated 4 years ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆70Jun 17, 2024Updated last year
- Tool to estimate deltas for sequence sets and answer questions about relative contribution☆21Mar 25, 2025Updated 11 months ago
- Prefix Filter: Practically and Theoretically Better Than Bloom.☆48Sep 12, 2022Updated 3 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Mar 13, 2025Updated 11 months ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Dec 11, 2020Updated 5 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated last year
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆86Feb 23, 2025Updated last year
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- Streaming assembly for MinION data☆25Dec 16, 2023Updated 2 years ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆40Jul 15, 2019Updated 6 years ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated last year
- ☆14Feb 19, 2026Updated last week