seryrzu / centroFlye
An algorithm for centromere assembly using long error-prone reads
☆26Updated 3 years ago
Alternatives and similar repositories for centroFlye:
Users that are interested in centroFlye are comparing it to the libraries listed below
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- ☆30Updated 5 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 4 months ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Very simple and configurable all-in-one dotplot program☆12Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 9 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated 6 months ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆17Updated 6 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- Convert HAL to VG☆22Updated 8 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- ☆22Updated 7 months ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated 9 months ago
- SV calling for diploid assemblies☆26Updated last year
- genomic alignment similarity search tool☆18Updated 10 months ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated last month
- Visualising discordant reads☆15Updated 9 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- SV genotyping with long reads☆40Updated last year