seryrzu / centroFlyeLinks
An algorithm for centromere assembly using long error-prone reads
☆25Updated 4 years ago
Alternatives and similar repositories for centroFlye
Users that are interested in centroFlye are comparing it to the libraries listed below
Sorting:
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 3 months ago
- recompute GFA link overlaps☆25Updated 3 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Programs implementing the trio-binning genome assembly method☆18Updated last year
- Convert HAL to VG☆22Updated last year
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 6 months ago
- ☆31Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- SV calling for diploid assemblies☆28Updated last year
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Updated last year
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆13Updated 2 years ago
- Add multiple thread function for genome comparison☆16Updated 3 years ago
- FastK based version of Merqury☆28Updated 3 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 9 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- ☆28Updated last year
- Detect and phase minor SNVs from long-read sequencing data☆13Updated 3 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago