seryrzu / centroFlye
An algorithm for centromere assembly using long error-prone reads
☆26Updated 3 years ago
Alternatives and similar repositories for centroFlye:
Users that are interested in centroFlye are comparing it to the libraries listed below
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- assembly evaluation tool☆34Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- ☆31Updated 5 years ago
- Very simple and configurable all-in-one dotplot program☆12Updated last year
- FastK based version of Merqury☆22Updated last month
- Improved Phased Assembler☆27Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 7 months ago
- Genome assembly soft-masking using Red (REpeat Detector)☆15Updated 6 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆26Updated 4 months ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- SV calling for diploid assemblies☆23Updated 10 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 2 years ago
- Convert HAL to VG☆21Updated 5 months ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated last year
- ☆35Updated 10 months ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆13Updated 2 years ago
- Scaffolding with assembly likelihood optimization☆20Updated 4 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 5 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated last month
- Archived version 1.0.2☆16Updated 5 years ago
- Visualising discordant reads☆15Updated 9 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago