ParBLiSS / PaSGAL
Parallel Sequence to Graph Alignment
☆35Updated 2 years ago
Alternatives and similar repositories for PaSGAL:
Users that are interested in PaSGAL are comparing it to the libraries listed below
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 2 years ago
- ☆28Updated last year
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 10 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- GFA insert into GenomicSQLite☆49Updated 3 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated 8 months ago
- Pan-Genomic Matching Statistics☆52Updated 11 months ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- ☆28Updated 6 months ago
- ☆17Updated last year
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 2 weeks ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 2 years ago
- ☆35Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆37Updated last year
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆41Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Optimized sequence graph implementations for graph genomics☆34Updated 3 months ago
- Convert HAL to VG☆22Updated 7 months ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- ☆17Updated 4 years ago
- GBWT-based handle graph☆31Updated 2 weeks ago
- Efficient, parallel compression for terabyte-scale data☆40Updated 2 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago