ParBLiSS / PaSGALLinks
Parallel Sequence to Graph Alignment
☆37Updated 2 years ago
Alternatives and similar repositories for PaSGAL
Users that are interested in PaSGAL are comparing it to the libraries listed below
Sorting:
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- ☆28Updated 2 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- ☆34Updated 5 years ago
- ☆28Updated 8 months ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Graph-based mapping of long sequences, noisy or HiFi.☆55Updated 4 years ago
- Pan-Genomic Matching Statistics☆52Updated last year
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- Banded Striped DNA Sequence Alignment☆45Updated 2 years ago
- Efficient, parallel compression for terabyte-scale data☆47Updated last month
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- ☆17Updated 2 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆50Updated last week
- ☆17Updated 4 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆20Updated 6 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- GBWT-based handle graph☆31Updated 3 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago