ParBLiSS / PaSGALLinks
Parallel Sequence to Graph Alignment
☆36Updated 2 years ago
Alternatives and similar repositories for PaSGAL
Users that are interested in PaSGAL are comparing it to the libraries listed below
Sorting:
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆41Updated 6 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- ☆28Updated 6 months ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- de Bruijn Graph-based read aligner☆34Updated 7 years ago
- Optimized sequence graph implementations for graph genomics☆34Updated last week
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- GBWT-based handle graph☆31Updated last week
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- ☆35Updated 5 years ago
- extract MSAs from genome variation graphs☆33Updated 5 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 5 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 3 months ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- ☆17Updated 4 years ago
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 7 months ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Updated 8 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆66Updated last year
- ☆24Updated 2 months ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆38Updated 4 years ago
- ☆28Updated last year
- Pan-genome Seed Index☆20Updated 7 months ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago
- ☆21Updated 5 years ago