ParBLiSS / PaSGAL
Parallel Sequence to Graph Alignment
☆37Updated 2 years ago
Alternatives and similar repositories for PaSGAL
Users that are interested in PaSGAL are comparing it to the libraries listed below
Sorting:
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 11 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 2 years ago
- ☆28Updated last month
- ☆34Updated 5 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- ☆17Updated last year
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- ☆28Updated 7 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- GFA insert into GenomicSQLite☆49Updated 3 years ago
- Pan-Genomic Matching Statistics☆52Updated last year
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated 9 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆50Updated last week
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Optimized sequence graph implementations for graph genomics☆34Updated 3 weeks ago
- Pan-genome Seed Index☆20Updated 2 months ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆41Updated last year
- 1-code framework: docs, C-library, and tools☆16Updated 3 months ago