ggonnella / rgfa
Ruby library for handling GFA files
☆16Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for rgfa
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆22Updated 7 months ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Updated 8 years ago
- Indel-aware consensus from aligned BAMs☆20Updated last year
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆10Updated 6 months ago
- Haplotype-aware genome assembly toolkit☆29Updated 4 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 4 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆13Updated last month
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- recompute GFA link overlaps☆25Updated 2 years ago
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Updated 6 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- ☆15Updated 4 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- Fast in-silico normalization algorithm for NGS data☆22Updated 3 years ago
- ☆28Updated last year
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last year
- Python3 module for running MUMmer and reading the output☆28Updated last week
- ☆14Updated last year
- ☆15Updated 6 years ago
- Compare assembly graph file formats☆15Updated 9 years ago
- ☆29Updated last year
- Code for building and testing variant ranking strategies☆16Updated 5 years ago
- A long read simulator based on badread idea☆20Updated 2 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆15Updated 7 months ago
- Differential k-mer analysis☆33Updated 9 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago