ggonnella / rgfa
Ruby library for handling GFA files
☆16Updated 8 years ago
Alternatives and similar repositories for rgfa:
Users that are interested in rgfa are comparing it to the libraries listed below
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Updated 9 years ago
- ☆28Updated 3 weeks ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Indel-aware consensus for aligned BAM☆21Updated last month
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 6 months ago
- ☆17Updated 4 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 6 months ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last year
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- ☆15Updated 4 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- ☆32Updated 2 years ago
- Differential k-mer analysis☆36Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- Python3 module for running MUMmer and reading the output☆32Updated last month
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Updated 6 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 2 years ago
- Find Unique genomic Regions☆29Updated last month
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago