De Bruijn graph representation in low memory
☆36Jul 6, 2024Updated 2 years ago
Alternatives and similar repositories for Blight
Users that are interested in Blight are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 7 years ago
- ☆14Oct 14, 2020Updated 6 years ago
- modular k-mer count matrix and Bloom filter construction for large read collections☆90Sep 18, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Building the compacted de Bruijn graph efficiently from references or reads.☆100Oct 1, 2026Updated last month
- compacted de Bruijn graph construction in low memory☆102Nov 4, 2025Updated 11 months ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆88Jan 25, 2024Updated 2 years ago
- Practical Dynamic de Bruijn Graphs☆18Oct 1, 2020Updated 6 years ago
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 4 years ago
- Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs☆227Aug 11, 2026Updated 2 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 5 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- De Bruijn graphs in Rust☆72Jul 22, 2024Updated 2 years ago
- Compacted and colored de Bruijn graph construction and querying☆100Oct 20, 2026Updated last week
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆53Mar 12, 2024Updated 2 years ago
- ☆10Jun 9, 2020Updated 6 years ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Apr 23, 2021Updated 5 years ago
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆55Oct 24, 2026Updated last week
- ☆12Sep 7, 2019Updated 7 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- A Python wrapper for the bbhash library for Minimal Perfect Hashing☆18Oct 26, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆41Nov 27, 2025Updated 11 months ago
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆27Oct 20, 2023Updated 3 years ago
- Go implementation of ntHash☆20Sep 16, 2021Updated 5 years ago
- Bit packed vector of integral values☆29Jan 28, 2025Updated last year
- ☆10Sep 28, 2026Updated last month
- Variant call verification☆19May 12, 2025Updated last year
- Construct a Physical Map from Linked Reads☆20Apr 1, 2026Updated 6 months ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆40Jul 15, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆24Apr 2, 2021Updated 5 years ago
- GBZ file format for pangenome graphs☆47Sep 14, 2026Updated last month
- REINDEER REad Index for abuNDancE quERy☆57Jul 6, 2025Updated last year
- A reimplementation of the WaveFront Alignment algorithm at low memory☆51May 22, 2024Updated 2 years ago
- Benchmark data structures for kmer sets.☆13Aug 29, 2026Updated 2 months ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆59Sep 18, 2026Updated last month