Malfoy / BlightLinks
De Bruijn graph representation in low memory
☆36Updated 10 months ago
Alternatives and similar repositories for Blight
Users that are interested in Blight are comparing it to the libraries listed below
Sorting:
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- ☆28Updated last month
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆50Updated this week
- SIMD-parallel BLAST X-drop DP on sequence graphs☆25Updated last year
- ☆14Updated 4 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- GBWT-based handle graph☆31Updated 2 months ago
- exploring viral genome assembly with variation graph tools☆20Updated 5 years ago
- ☆17Updated last year
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- ☆15Updated 4 years ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆16Updated 6 years ago
- ☆25Updated 4 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated this week
- Pan-genome Seed Index☆20Updated 2 months ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 4 years ago
- ☆12Updated 5 years ago
- General purpose utility related to GAF files☆28Updated last week
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆24Updated last month
- Benchmarking pairwise aligners☆36Updated 3 months ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 2 months ago
- Johns Hopkins University student-led genomics paper discussion group☆13Updated 5 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 7 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago