Malfoy / BlightLinks
De Bruijn graph representation in low memory
☆35Updated last year
Alternatives and similar repositories for Blight
Users that are interested in Blight are comparing it to the libraries listed below
Sorting:
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 6 months ago
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- ☆28Updated 5 months ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆52Updated 3 weeks ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated 7 months ago
- GBWT-based handle graph☆31Updated 2 months ago
- ☆14Updated 4 years ago
- GBWT in Rust☆42Updated 5 months ago
- Histosketching Using Little Kmers☆56Updated 2 years ago
- ☆12Updated 6 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- ☆24Updated 2 weeks ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆25Updated 4 months ago
- Pan-genome Seed Index☆20Updated 6 months ago
- Parallel Sequence to Graph Alignment☆36Updated 2 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- ☆24Updated 4 years ago
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- A fast, AVX2 and ARM Neon accelerated FM index library☆34Updated 9 months ago
- ☆16Updated 5 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 2 months ago
- Efficient, parallel compression for terabyte-scale data☆48Updated 4 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated last month
- GFA insert into GenomicSQLite☆48Updated 4 years ago
- Indel-aware consensus for aligned BAM☆21Updated 3 weeks ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago