Malfoy / BlightLinks
De Bruijn graph representation in low memory
☆35Updated last year
Alternatives and similar repositories for Blight
Users that are interested in Blight are comparing it to the libraries listed below
Sorting:
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 10 months ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆20Updated 5 years ago
- Contains the description of a file format to store kmers and associated values☆34Updated 3 years ago
- ☆28Updated 10 months ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 7 months ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- Index kmtricks bf matrices☆46Updated last month
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆59Updated this week
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated 2 months ago
- Parallel Sequence to Graph Alignment☆36Updated 3 years ago
- Pan-genome Seed Index☆20Updated 10 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 6 months ago
- ☆15Updated 5 years ago
- Histosketching Using Little Kmers☆56Updated 2 years ago
- ☆14Updated 5 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 7 years ago
- exploring viral genome assembly with variation graph tools☆20Updated 5 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- An experimental tool to find approximate max-cuts in a large graph☆10Updated 4 years ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 4 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆53Updated last year
- GBWT in Rust☆45Updated last month
- ☆16Updated 2 years ago
- A repository for generating strobemers and evalaution☆79Updated last year
- ☆12Updated 6 years ago
- extract MSAs from genome variation graphs☆34Updated 5 years ago
- ☆24Updated 4 years ago