jasperlinthorst / reveal
Graph based multi genome aligner
☆47Updated 3 years ago
Alternatives and similar repositories for reveal:
Users that are interested in reveal are comparing it to the libraries listed below
- ☆28Updated last year
- ☆35Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆56Updated 7 years ago
- finshingTool☆55Updated 8 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 2 years ago
- ✏️ Genome assembly polishing & SNV detection☆66Updated last week
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- GFA insert into GenomicSQLite☆48Updated 3 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated this week
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 3 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last month
- Segmental Duplication Assembler (SDA).☆44Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- Structural variant discovery and genotyping from mapped PacBio HiFi data☆40Updated last month
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆43Updated 4 years ago
- TGS scaffolding☆46Updated 3 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Improved Phased Assembler☆28Updated 2 years ago
- Statistics and analysis for variation graphs☆37Updated 2 months ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- Versatile simulator for structural variance and Nanopore/PacBio sequencing reads☆24Updated last year
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆54Updated last year
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago