jasperlinthorst / revealLinks
Graph based multi genome aligner
☆47Updated 3 years ago
Alternatives and similar repositories for reveal
Users that are interested in reveal are comparing it to the libraries listed below
Sorting:
- ☆34Updated 5 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆58Updated 7 years ago
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆45Updated 2 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- finshingTool☆54Updated 8 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- ☆28Updated 2 months ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- TGS scaffolding☆46Updated 3 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 3 weeks ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆38Updated 2 months ago
- Show pangenome graphs in an easy way☆56Updated 2 years ago
- ☆47Updated 5 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- PacBio hybrid error correction through iterative short read consensus☆61Updated 6 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆44Updated 4 years ago
- Linked-Read Alignment Tool☆27Updated 6 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago