jasperlinthorst / revealLinks
Graph based multi genome aligner
☆49Updated 4 years ago
Alternatives and similar repositories for reveal
Users that are interested in reveal are comparing it to the libraries listed below
Sorting:
- ☆35Updated 5 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- de Bruijn Graph-based read aligner☆35Updated 7 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 4 months ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- Making diploid assembly becomes common practice for genomic study☆30Updated 8 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆59Updated 8 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- extract MSAs from genome variation graphs☆34Updated 5 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 7 years ago
- ☆46Updated 5 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆71Updated 6 years ago
- ☆51Updated last year
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆45Updated 3 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- ☆21Updated 6 years ago
- Differential k-mer analysis☆39Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Updated 7 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆48Updated 7 years ago