jasperlinthorst / revealLinks
Graph based multi genome aligner
☆49Updated 4 years ago
Alternatives and similar repositories for reveal
Users that are interested in reveal are comparing it to the libraries listed below
Sorting:
- ☆35Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of…☆38Updated 2 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 7 years ago
- de Bruijn Graph-based read aligner☆34Updated 7 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 3 months ago
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- ☆49Updated last year
- Custom tools to 'facilitate' BioNano Genomics data analysis☆34Updated 7 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Updated 4 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆49Updated 7 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆45Updated 3 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- ☆21Updated 6 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆59Updated 8 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆71Updated 6 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 5 months ago
- ☆46Updated 5 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago