rvaser / ralaLinks
Layout module for raw de novo genome assembly of long uncorrected reads.
☆21Updated 4 years ago
Alternatives and similar repositories for rala
Users that are interested in rala are comparing it to the libraries listed below
Sorting:
- ☆28Updated 5 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- GBWT-based handle graph☆31Updated 2 months ago
- GFA insert into GenomicSQLite☆48Updated 4 years ago
- ☆24Updated 3 weeks ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Parallel Sequence to Graph Alignment☆36Updated 2 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- ☆32Updated 2 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 5 months ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 3 months ago
- Pan-genome Seed Index☆20Updated 6 months ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 2 months ago
- Optimized sequence graph implementations for graph genomics☆34Updated this week
- Utilities to detect and profile `het-kmers`☆11Updated last year
- VariantStore: A Large-Scale Genomic Variant Search Index☆38Updated 4 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30Updated 3 years ago
- Generate interactive dotplot from mummer4 output using plotly☆27Updated 5 years ago
- Indel-aware consensus for aligned BAM☆21Updated last month
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- ☆15Updated 5 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago