EXPERIMENTAL implementation of side graph
☆10Apr 16, 2015Updated 11 years ago
Alternatives and similar repositories for sdg
Users that are interested in sdg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆43Apr 20, 2016Updated 10 years ago
- ☆12Feb 19, 2017Updated 9 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Apr 8, 2016Updated 10 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 10 years ago
- ☆25May 21, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tools for bam file processing☆56Apr 20, 2015Updated 11 years ago
- FermiKit small variant calls for public SGDP samples☆17Sep 22, 2016Updated 9 years ago
- ☆36Aug 13, 2020Updated 5 years ago
- The Dagstuhl Format for Assembly☆13Oct 16, 2017Updated 8 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Jul 22, 2015Updated 11 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆95Sep 4, 2019Updated 6 years ago
- variant integration methods for the 1000 Genomes Project☆21Jan 16, 2018Updated 8 years ago
- FM-index representation of a de Bruijn graph☆26Aug 7, 2017Updated 8 years ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Apr 25, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- gap opening realigner for BAM data streams☆18Oct 17, 2012Updated 13 years ago
- Relative data structures based on the BWT☆12Apr 28, 2018Updated 8 years ago
- ☆15Mar 7, 2016Updated 10 years ago
- Genome-wide reconstruction of complex structural variants☆39Jun 21, 2022Updated 4 years ago
- Assemble the Genome in a Bottle sequencing data☆10Aug 4, 2017Updated 8 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Nov 30, 2020Updated 5 years ago
- Incremental construction of FM-index for DNA sequences☆72Jun 12, 2024Updated 2 years ago
- Parallel Block GZIP☆50Aug 4, 2016Updated 9 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Sep 16, 2021Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- A configurable de novo assembly pipeline☆30Jun 29, 2016Updated 10 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Nov 27, 2025Updated 7 months ago
- A support vector machine for calling variants from next-gen sequencing data☆15Dec 12, 2013Updated 12 years ago
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆32Feb 20, 2018Updated 8 years ago
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago
- Docker containers that demonstrate a proof of concept bwa alignment workflow☆14Jan 13, 2015Updated 11 years ago
- efficient alignment of strings to partially ordered string graphs☆33Apr 22, 2026Updated 3 months ago
- Backend Server for CIViC Project☆39Jul 6, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Variant Caller Analysis Dashboard and Data Management System☆36Feb 8, 2016Updated 10 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Sep 26, 2016Updated 9 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Aug 23, 2019Updated 6 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Mar 17, 2016Updated 10 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆89Jun 19, 2018Updated 8 years ago
- succinct labeled graphs with collections and paths☆15Nov 18, 2018Updated 7 years ago
- Scaffolding genomes using synthetic long read clouds☆20Oct 11, 2016Updated 9 years ago