Pfern / PANGenomicsLinks
☆15Updated 7 years ago
Alternatives and similar repositories for PANGenomics
Users that are interested in PANGenomics are comparing it to the libraries listed below
Sorting:
- GBWT-based handle graph☆31Updated last week
- ☆28Updated 8 months ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 5 months ago
- ☆14Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Updated this week
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Updated 5 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- ☆26Updated 4 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing☆21Updated 4 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated last month
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- JTK -- a regional diploid genome assembler☆25Updated last year
- Python bindings to minimap2☆16Updated 8 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22Updated 7 years ago
- ☆16Updated 3 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 9 months ago
- ☆33Updated 3 years ago
- ☆16Updated 11 months ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- ☆16Updated 7 years ago
- ☆24Updated 3 months ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30Updated 7 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year