Alternatives and similar repositories for strobemers

Users that are interested in strobemers are comparing it to the libraries listed below

• lh3 / ropebwt3
  BWT construction and search
  ☆120Updated 2 weeks ago
• smarco / BiWFA-paper
  Bidirectional WFA (Paper)
  ☆47Updated last year
• dnbaker / dashing2
  Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.
  ☆66Updated last year
• ggonnella / gfapy
  Gfapy: a flexible and extensible software library for handling sequence graphs in Python
  ☆69Updated 11 months ago
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆53Updated last year
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆105Updated last month
• morispi / CONSENT
  Scalable long read self-correction and assembly polishing with multiple sequence alignment
  ☆53Updated last year
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated last year
• jermp / fulgor
  ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆55Updated 2 weeks ago
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆56Updated 3 months ago
• lh3 / unimap
  A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
  ☆87Updated 4 years ago
• pangenome / seqwish
  alignment to variation graph inducer
  ☆149Updated 2 weeks ago
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆76Updated last year
• ddiazdom / lcg
  Efficient, parallel compression for terabyte-scale data
  ☆48Updated 3 weeks ago
• mourisl / centrifuger
  Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.
  ☆69Updated last week
• seryrzu / unialigner
  ☆66Updated last year
• vikshiv / mumemto
  Mumemto: multi-MUM and MEM finding across pangenomes
  ☆113Updated last week
• refresh-bio / colord
  A versatile compressor of third generation sequencing reads.
  ☆51Updated last year
• natir / yacrd
  Yet Another Chimeric Read Detector
  ☆81Updated 11 months ago
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆65Updated last week
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆83Updated last month
• refresh-bio / agc
  Assembled Genomes Compressor
  ☆169Updated 11 months ago
• bcgsc / ntEdit
  ✏️ Genome assembly polishing & SNV detection
  ☆70Updated 3 weeks ago
• GeneDx / pgr-tk
  ☆101Updated last year
• ekimb / mapquik
  Efficient low-divergence mapping of long reads in minimizer space
  ☆68Updated 2 years ago
• thegenemyers / FASTK
  A fast K-mer counter for high-fidelity shotgun datasets
  ☆131Updated last month
• lh3 / longdust
  Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome
  ☆77Updated last month
• bcgsc / ntJoin
  🔗Genome assembly scaffolder using minimizer graphs
  ☆84Updated last year
• telatin / bamtocov
  🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  
  ☆64Updated 4 months ago
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆77Updated last month