TavorB / spectral_jaccard_similarityLinks
☆14Updated 2 years ago
Alternatives and similar repositories for spectral_jaccard_similarity
Users that are interested in spectral_jaccard_similarity are comparing it to the libraries listed below
Sorting:
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 8 months ago
- ☆28Updated 3 months ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 9 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆21Updated last year
- ☆25Updated 4 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Updated 8 months ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Updated 4 years ago
- REINDEER REad Index for abuNDancE quERy☆58Updated last week
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- ☆14Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆43Updated last year
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- my PhD thesis☆36Updated 6 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Validation of sycnmers compared to minimizers☆12Updated 2 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 3 months ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago