TavorB / spectral_jaccard_similarity
☆14Updated last year
Related projects ⓘ
Alternatives and complementary repositories for spectral_jaccard_similarity
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆13Updated last month
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Updated 3 weeks ago
- fastq quality assessment and filtering tool☆18Updated last year
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- ☆28Updated last year
- A long-read analysis toolbox for cancer and population genomics☆20Updated 8 months ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆21Updated last year
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Indel-aware consensus from aligned BAMs☆20Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- ☆13Updated last year
- Fast in-silico normalization algorithm for NGS data☆22Updated 3 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Generate interactive dotplot from mummer4 output using plotly☆25Updated 4 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 4 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Variant call adjudication☆16Updated 5 months ago
- Find Unique genomic Regions☆29Updated this week