natir / nuc2bitLinks
☆14Updated 4 years ago
Alternatives and similar repositories for nuc2bit
Users that are interested in nuc2bit are comparing it to the libraries listed below
Sorting:
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- ☆24Updated 3 weeks ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆25Updated 4 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆45Updated 11 months ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- ☆24Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Updated 10 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 5 months ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 6 months ago
- A long read simulator based on badread idea☆22Updated 2 years ago
- GBWT in Rust☆42Updated 5 months ago
- A SIMD-accelerated library to compute random minimizers☆33Updated this week
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Updated 4 years ago
- ☆17Updated 9 months ago
- GBWT-based handle graph☆31Updated 2 months ago
- De Bruijn graph representation in low memory☆35Updated last year
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 2 years ago
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated 8 months ago
- ☆21Updated 9 months ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆17Updated 6 years ago
- Generate random test data for bioinformatics☆26Updated last year
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10Updated 4 years ago
- ☆14Updated 2 years ago
- Wavefront alignment algorithm (WFA) in Golang☆32Updated last month
- The python binding for D4 format☆16Updated 3 years ago