Alternatives and similar repositories for nuc2bit

Users that are interested in nuc2bit are comparing it to the libraries listed below

• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆34Updated 3 years ago
• langmead-lab / vargas
  ☆24Updated 5 months ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago
• rchikhi / rust-seq2kminmers
  Iterate k-min-mers from a DNA sequence in Rust
  ☆13Updated last year
• COMBINE-lab / mim
  A small, auxiliary index to massively improve parallel fastq parsing
  ☆30Updated 3 weeks ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 2 months ago
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆25Updated 2 years ago
• medvedevgroup / UST
  ☆24Updated 4 years ago
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆28Updated 9 months ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• Malfoy / NIQKI
  Next Index to Query Kmer Intersection
  ☆17Updated 3 years ago
• rust-seq / simd-minimizers
  A SIMD-accelerated library to compute random minimizers
  ☆36Updated 3 weeks ago
• Kingsford-Group / variantstore
  VariantStore: A Large-Scale Genomic Variant Search Index
  ☆39Updated 4 years ago
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆47Updated 3 weeks ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated this week
• natir / rustyread
  A long read simulator based on badread idea
  ☆22Updated 3 years ago
• nh13 / fqme
  ☆21Updated last month
• chfi / rs-wfa
  Rust bindings to the wavefront algorithm C implementation
  ☆17Updated 3 years ago
• cdarby / genomicsjc
  Johns Hopkins University student-led genomics paper discussion group
  ☆13Updated 5 years ago
• thegenemyers / PHASE-MERS
  Utilities to detect and profile `het-kmers`
  ☆12Updated last year
• TavorB / spectral_jaccard_similarity
  ☆15Updated 3 years ago
• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆30Updated last week
• VGP / vgp-tools
  ☆28Updated 10 months ago
• richarddurbin / syng
  syncmer graphs, and perhaps other sorts of sequence graphs
  ☆24Updated last month
• richarddurbin / hexamer
  find likely coding segments in DNA using composition-normalised hexamer tables
  ☆18Updated last year
• nlhepler / spoa-rs
  A rust wrapper for the spoa C++ partial order alignment library
  ☆10Updated 7 months ago
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆32Updated 6 months ago
• jltsiren / gbwt-rs
  GBWT in Rust
  ☆45Updated last month
• algbio / matchtigs
  Minimum plain text representation of kmer sets
  ☆16Updated last year
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated 2 years ago