imartayan / CBLLinks
A Rust library providing fully dynamic sets of k-mers with high locality
☆46Updated last year
Alternatives and similar repositories for CBL
Users that are interested in CBL are comparing it to the libraries listed below
Sorting:
- Iterate over minimizers of a DNA sequence☆31Updated last year
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆20Updated last week
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 3 months ago
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆26Updated 6 months ago
- Fast and exact gap-affine partial order alignment☆56Updated 2 weeks ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆55Updated 3 weeks ago
- A FASTA/FASTQ format parser library☆20Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 7 months ago
- ☆13Updated 2 months ago
- Shared k-mer content between two genomes☆18Updated 2 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 2 months ago
- A SIMD-accelerated library to compute random minimizers☆33Updated 2 weeks ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Updated 4 years ago
- ☆14Updated 5 years ago
- Rust library for processing sequencing reads.☆25Updated last year
- Extracts subgraphs or components from a graph in GFA format☆25Updated 11 months ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Updated 11 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆35Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- Generate random test data for bioinformatics☆26Updated last year
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆31Updated last month
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆25Updated last year
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- ☆24Updated 2 months ago
- Benchmarking pairwise aligners☆36Updated 8 months ago