imartayan / CBLLinks
A Rust library providing fully dynamic sets of k-mers with high locality
☆46Updated last year
Alternatives and similar repositories for CBL
Users that are interested in CBL are comparing it to the libraries listed below
Sorting:
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 5 months ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆23Updated last month
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆27Updated 8 months ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆59Updated last week
- Iterate over minimizers of a DNA sequence☆31Updated last year
- A FASTA/FASTQ format parser library☆20Updated last year
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 9 months ago
- Contains the description of a file format to store kmers and associated values☆34Updated 3 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- Fast and exact gap-affine partial order alignment☆57Updated last month
- Rust library for processing sequencing reads.☆25Updated last year
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- Next Index to Query Kmer Intersection☆17Updated 2 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆38Updated 4 months ago
- ☆13Updated last month
- Hierarchical binned indexed data store for on-disk genomic data.☆13Updated 11 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- Optimal distance lower bound k-mer sampling.☆12Updated last year
- Generate random test data for bioinformatics☆27Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆35Updated last year
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Updated last year
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆39Updated 2 weeks ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Updated 4 years ago
- k-mers and the like☆22Updated 2 weeks ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Updated last year
- A SIMD-accelerated library to compute random minimizers☆33Updated last month
- Rust wrapper for the next generation (still currently in C++)☆29Updated 5 months ago