A Rust library providing fully dynamic sets of k-mers with high locality
☆47Feb 12, 2026Updated last month
Alternatives and similar repositories for CBL
Users that are interested in CBL are comparing it to the libraries listed below
Sorting:
- Wavefront alignment algorithm (WFA) in Golang☆31Jul 26, 2025Updated 7 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆24Nov 20, 2025Updated 4 months ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated last year
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 3 years ago
- Compacted and colored de Bruijn graph construction and querying☆94Mar 6, 2026Updated 2 weeks ago
- String algorithm visualizations☆13Feb 7, 2023Updated 3 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Mar 13, 2025Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Apr 24, 2025Updated 10 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆42Jan 9, 2026Updated 2 months ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- modular k-mer count matrix and Bloom filter construction for large read collections☆86Dec 15, 2025Updated 3 months ago
- ☆21Dec 26, 2025Updated 2 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 2 weeks ago
- Fast sequence distance estimates☆27Mar 10, 2026Updated last week
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 4 years ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆38Mar 9, 2026Updated last week
- Split k-mer analysis – version 2☆104Jan 29, 2026Updated last month
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated last year
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Nail is an Alignment Inference tooL☆55Feb 21, 2026Updated last month
- Benchmarking pairwise aligners☆37Feb 8, 2025Updated last year
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆94Updated this week
- Iterate over minimizers of a DNA sequence☆32Jul 12, 2024Updated last year
- ☆13Nov 15, 2017Updated 8 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Sep 10, 2025Updated 6 months ago
- Fast and exact gap-affine partial order alignment☆59Feb 3, 2026Updated last month
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆39Feb 20, 2026Updated last month
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- Mapping sequencing data to De Bruijn graphs, fast☆32Updated this week
- base-accurate DNA sequence alignments using WFA and mashmap3☆212Updated this week
- A new high-resolution long-read metagenome assembler for even noisy reads☆124Mar 14, 2026Updated last week
- A k-mer search engine for all Sequence Read Archive public accessions☆37Oct 29, 2024Updated last year
- Assembled Genomes Compressor☆178Nov 25, 2024Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60Updated this week
- ☆14Jan 20, 2016Updated 10 years ago
- BWT construction and search☆126Jan 14, 2026Updated 2 months ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago