MoinSebi / gSVLinks
☆11Updated 2 years ago
Alternatives and similar repositories for gSV
Users that are interested in gSV are comparing it to the libraries listed below
Sorting:
- Utilities to detect and profile `het-kmers`☆11Updated last year
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 4 years ago
- ☆16Updated 2 years ago
- For bluntifying overlapped GFAs☆13Updated last year
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Updated 9 months ago
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 8 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 4 months ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- ☆16Updated 3 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- convert variation graph alignments to coverage maps over nodes☆24Updated last month
- ☆25Updated 4 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 3 weeks ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆13Updated 5 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- nimble aligner that will map your reads to the references on a laptop☆12Updated 8 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆12Updated 3 months ago
- ☆17Updated 6 months ago
- find likely coding segments in DNA using composition-normalised hexamer tables☆16Updated 9 months ago
- base-level dotplots from PAF alignments☆26Updated 2 weeks ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 8 months ago
- Pangenome Graph Variation Format (PGVF)☆20Updated 4 years ago
- Align subreads to ccs reads☆14Updated last month
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated last month