MoinSebi / gSVLinks
☆11Updated 3 years ago
Alternatives and similar repositories for gSV
Users that are interested in gSV are comparing it to the libraries listed below
Sorting:
- Utilities to detect and profile `het-kmers`☆12Updated last year
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 6 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10Updated 4 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Updated 2 weeks ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Updated 7 months ago
- ☆17Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Updated last month
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated last year
- For bluntifying overlapped GFAs☆13Updated last year
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- ☆16Updated 4 years ago
- Next Index to Query Kmer Intersection☆17Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 5 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 5 months ago
- convert variation graph alignments to coverage maps over nodes☆26Updated last month
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated last year
- ☆24Updated 4 months ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- ☆12Updated 4 months ago
- ☆23Updated 4 months ago
- base-level dotplots from PAF alignments☆29Updated 4 months ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Updated 9 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated 2 years ago
- Long-read aligner to pangenome graphs☆29Updated last year
- Benchmarking variant calling in polyploids☆15Updated 4 years ago
- ☆28Updated 5 months ago