rcedgar / syncmerLinks
Validation of sycnmers compared to minimizers
☆11Updated 7 months ago
Alternatives and similar repositories for syncmer
Users that are interested in syncmer are comparing it to the libraries listed below
Sorting:
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Updated 2 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆27Updated 7 months ago
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 4 months ago
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 8 months ago
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆11Updated last year
- Python wrapper for wavefront alignment using WFA2-lib☆37Updated last year
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Utilities to detect and profile `het-kmers`☆11Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆57Updated 2 weeks ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Updated 2 years ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆17Updated 6 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 6 months ago
- recompute GFA link overlaps☆25Updated 3 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆35Updated last year
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated this week
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 3 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated last year
- A more efficient quality control tool for sequencing data☆31Updated 6 months ago
- Long-read aligner to pangenome graphs☆28Updated last year
- ☆28Updated 8 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Updated last month
- ☆13Updated last year
- ☆17Updated 4 years ago
- Contains the description of a file format to store kmers and associated values☆34Updated 3 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆20Updated 2 weeks ago
- A novel method for sequence similarity estimation☆28Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 7 months ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30Updated 3 years ago