rcedgar / syncmer
Validation of sycnmers compared to minimizers
☆11Updated 4 years ago
Alternatives and similar repositories for syncmer:
Users that are interested in syncmer are comparing it to the libraries listed below
- RabbitMash: an efficient highly optimized implementation of Mash.☆21Updated last year
- recompute GFA link overlaps☆25Updated 2 years ago
- ☆28Updated 3 weeks ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 3 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 10 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆10Updated last year
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- ☆32Updated 2 years ago
- ☆15Updated 4 years ago
- Wavefront alignment algorithm (WFA) in Golang☆29Updated 6 months ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆16Updated 5 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- ☆14Updated 2 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- Utilities to detect and profile `het-kmers`☆11Updated 9 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆22Updated this week
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 6 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- Paint genomes with taxa-specific k-mer probabilities☆8Updated 7 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 5 months ago
- ☆12Updated 5 months ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Updated last year
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- A long read simulator based on badread idea☆22Updated 2 years ago
- ☆25Updated 3 years ago