Validation of sycnmers compared to minimizers
☆11May 10, 2025Updated last year
Alternatives and similar repositories for syncmer
Users that are interested in syncmer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A repository for generating strobemers and evalaution☆79Apr 16, 2024Updated 2 years ago
- ☆10Jun 16, 2022Updated 4 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆29Feb 6, 2023Updated 3 years ago
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆12May 5, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆20Aug 18, 2020Updated 6 years ago
- DartMinHash: Fast Sketching for Weighted Sets☆12Dec 8, 2025Updated 9 months ago
- ☆11Dec 9, 2022Updated 3 years ago
- Ultrafast identification of signature sequences in microbial genomes☆20Updated this week
- RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures☆12Jun 5, 2024Updated 2 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 5 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆77Jun 17, 2024Updated 2 years ago
- ☆15Dec 8, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ProbMinHash – A Class of Locality-Sensitive Hash Algorithms for the (Probability) Jaccard Similarity☆44Oct 26, 2020Updated 5 years ago
- GBWT-based handle graph☆35Aug 19, 2026Updated last month
- MetagenOmic read Re-Assigner and abundance quantifier☆22Jun 24, 2026Updated 2 months ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated 2 years ago
- Sketch-based surveillance platform☆13Aug 14, 2026Updated last month
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- Ultra-rapid detection of viral variants directly from sequencing data☆47Updated this week
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated last year
- Space-efficient pseudoalignment with a colored de Bruijn graph☆58Mar 13, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆60Sep 3, 2026Updated 2 weeks ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- Histosketching Using Little Kmers☆56May 25, 2023Updated 3 years ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 9 months ago
- Methods to determine sequence element (unitig) presence/absence☆28Mar 6, 2026Updated 6 months ago
- Aligns short reads using dynamic seed size with strobemers☆206Updated this week
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆55Sep 12, 2026Updated last week
- Needleman-Wunsch Alignment in Go☆12Nov 9, 2020Updated 5 years ago
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).☆13Apr 20, 2021Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Python implementation of Smith Waterman Algorithm☆14Jul 25, 2023Updated 3 years ago
- GBZ file format for pangenome graphs☆46Updated this week
- Kmer Analysis of Pileups for Genotyping☆41Jul 16, 2026Updated 2 months ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated 3 months ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- ☆23Dec 4, 2023Updated 2 years ago
- LMS algorithm for computing edit distance with SIMD optimizations☆11Mar 25, 2024Updated 2 years ago