Alternatives and similar repositories for syncmer

Users that are interested in syncmer are comparing it to the libraries listed below

• lh3 / lv89
  C implementation of the Landau-Vishkin algorithm
  ☆35Updated 3 years ago
• maxrossi91 / moni
  MONI: A Pangenomic Index for Finding MEMs
  ☆37Updated 5 months ago
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆25Updated 4 months ago
• hitbc / deSAMBA
  deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches
  ☆10Updated last year
• ZekunYin / RabbitMash
  RabbitMash: an efficient highly optimized implementation of Mash.
  ☆20Updated last year
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆32Updated 4 years ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated last year
• VGP / vgp-tools
  ☆28Updated 5 months ago
• PROBIC / mSWEEP
  mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
  ☆14Updated 11 months ago
• biointec / browniealigner
  Alignment algorithm for short Illumina reads to a de Bruijn graph
  ☆17Updated 6 years ago
• kcleal / pywfa
  Python wrapper for wavefront alignment using WFA2-lib
  ☆35Updated 10 months ago
• HongzheGuo / deBGA
  de Bruijn Graph-based read aligner
  ☆33Updated 7 years ago
• lh3 / pubLRasm
  ☆17Updated 4 years ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated 3 months ago
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆32Updated last month
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• mbhall88 / pafpy
  A lightweight library for working with PAF (Pairwise mApping Format) files
  ☆30Updated 3 years ago
• sourmash-bio / sourmash_plugin_branchwater
  fast, multithreaded sourmash operations: search, compare, and gather.
  ☆23Updated last week
• richarddurbin / syng
  syncmer graphs, and perhaps other sorts of sequence graphs
  ☆21Updated 5 months ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆25Updated last week
• thegenemyers / PHASE-MERS
  Utilities to detect and profile `het-kmers`
  ☆11Updated last year
• IndexThePlanet / LoganSearch
  A k-mer search engine for all Sequence Read Archive public accessions
  ☆32Updated 10 months ago
• jermp / fulgor
  ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆52Updated last week
• RabbitBio / RabbitQCPlus
  A more efficient quality control tool for sequencing data
  ☆31Updated 3 months ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆48Updated 4 years ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆39Updated last year
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆33Updated 3 years ago
• rchikhi / rust-seq2kminmers
  Iterate k-min-mers from a DNA sequence in Rust
  ☆13Updated last year