yukiteruono / pbsim2
PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores
☆72Updated last year
Alternatives and similar repositories for pbsim2:
Users that are interested in pbsim2 are comparing it to the libraries listed below
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆74Updated 2 weeks ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 3 months ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆56Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆115Updated 3 weeks ago
- Error correction of ONT transcript reads☆58Updated last year
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- Visualise and analyse nanopore (ONT) raw signals☆115Updated 3 months ago
- Splitting of sequence reads by internal adapter sequence search☆50Updated last year
- ☆76Updated 4 years ago
- ☆46Updated 8 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 3 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- A local-haplotagging-based small and structural variant caller☆74Updated last week
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆59Updated 5 years ago
- ☆110Updated this week
- Call select base modifications in PacBio HiFi reads☆7Updated 3 months ago
- Toolkit for calling structural variants using short or long reads☆103Updated 2 weeks ago
- Variant calling tool for long-read sequencing data☆108Updated last month
- ☆115Updated last month
- Assemblies from HPP Year 1 production☆73Updated last year
- Simple pileup-based variant caller☆89Updated 2 weeks ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- Predictive kmer models for development use☆55Updated last year
- Fast and accurate coordinate conversion between assemblies☆112Updated last month
- Pangenome graphs (review article on graph-based pangenomic methods)☆72Updated 5 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆94Updated 2 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- ☆39Updated 3 weeks ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 4 years ago