yukiteruono / pbsim2Links
PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores
☆72Updated last year
Alternatives and similar repositories for pbsim2
Users that are interested in pbsim2 are comparing it to the libraries listed below
Sorting:
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆78Updated 2 months ago
- A local-haplotagging-based small and structural variant caller☆78Updated last month
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 2 months ago
- ☆112Updated last month
- Pipeline to convert a haploid assembly into diploid☆100Updated 5 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 4 years ago
- Toolkit for calling structural variants using short or long reads☆105Updated last week
- Long read aligner☆115Updated 2 years ago
- Call select base modifications in PacBio HiFi reads☆7Updated 4 months ago
- ☆62Updated last week
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆57Updated last year
- ☆116Updated last week
- Fast and accurate coordinate conversion between assemblies☆114Updated 3 months ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆67Updated 2 years ago
- Phased assembly variant caller☆119Updated 6 months ago
- Visualise and analyse nanopore (ONT) raw signals☆117Updated this week
- Variant calling tool for long-read sequencing data☆110Updated 3 months ago
- Collection of tools for the analysis of CpG data☆85Updated 4 months ago
- Simple pileup-based variant caller☆90Updated 2 months ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- A list of software for pangenomics☆117Updated last month
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆110Updated last week
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆57Updated last year
- ☆48Updated 10 months ago
- PGR-TK: Pangenome Research Tool Kit☆100Updated last year
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 2 years ago
- vcfdist: Accurately benchmarking phased variant calls☆80Updated 2 weeks ago