yukiteruono / pbsim2Links
PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores
☆74Updated 2 years ago
Alternatives and similar repositories for pbsim2
Users that are interested in pbsim2 are comparing it to the libraries listed below
Sorting:
- Variant calling tool for long-read sequencing data☆116Updated 9 months ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated last year
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆70Updated 3 years ago
- Long read aligner☆115Updated 2 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- A local-haplotagging-based small and structural variant caller☆90Updated 3 weeks ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 4 months ago
- ☆49Updated last year
- ☆80Updated last year
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Fast and accurate coordinate conversion between assemblies☆117Updated 2 months ago
- slow5lib is a software library for reading & writing SLOW5 files.☆47Updated this week
- vcfdist: Accurately benchmarking phased variant calls☆85Updated 3 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆56Updated last year
- Pipeline to convert a haploid assembly into diploid☆109Updated 11 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Updated 4 years ago
- This is an updated mirror of the original PacBio Read Simulator☆39Updated 7 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆72Updated 5 years ago
- ☆68Updated 2 weeks ago
- Structural variant caller for real-time long-read sequencing data☆61Updated 3 years ago
- ☆78Updated 5 years ago
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆86Updated 8 months ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆73Updated 5 years ago
- A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043☆69Updated last year
- Visualise and analyse nanopore (ONT) raw signals☆126Updated 3 weeks ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 2 months ago