yukiteruono / pbsim2Links
PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores
☆73Updated 2 years ago
Alternatives and similar repositories for pbsim2
Users that are interested in pbsim2 are comparing it to the libraries listed below
Sorting:
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Updated 3 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆103Updated 4 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated last year
- vcfdist: Accurately benchmarking phased variant calls☆83Updated last month
- Long read aligner☆115Updated 2 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- A local-haplotagging-based small and structural variant caller☆87Updated 2 weeks ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated last month
- ☆78Updated 9 months ago
- ☆79Updated 5 years ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆72Updated 5 years ago
- This is an updated mirror of the original PacBio Read Simulator☆38Updated 7 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 4 years ago
- Fast and accurate coordinate conversion between assemblies☆117Updated 3 weeks ago
- Nanopore raw signal repeat detection pipeline☆45Updated 2 years ago
- Banded Striped DNA Sequence Alignment☆47Updated 2 years ago
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆84Updated 6 months ago
- a tool for simulating nanopore raw signal data☆70Updated last month
- Toolkit for calling structural variants using short or long reads☆109Updated last month
- ☆66Updated last month
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Set of tools to manipulate and visualize modified base bam files☆57Updated 3 years ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Visualise and analyse nanopore (ONT) raw signals☆122Updated last month
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆57Updated last year
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- Copy number caller for long read data including SNV utilization☆68Updated 7 months ago
- Structural variant caller for real-time long-read sequencing data☆57Updated 2 years ago
- Estimating k-mer coverage histogram of genomics data☆76Updated last year