π 𧬠SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.
β108Oct 24, 2026Updated this week
Alternatives and similar repositories for sshash
Users that are interested in sshash are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.β44Nov 18, 2023Updated 2 years ago
- ProphAsm β a rapid computation of simplitigs directly from k-mer setsβ25Feb 17, 2023Updated 3 years ago
- β‘οΈ π§¬ Fulgor is a fast and space-efficient colored de Bruijn graph index.β59Sep 18, 2026Updated last month
- A small, auxiliary index to massively improve parallel fastq parsingβ32Mar 6, 2026Updated 7 months ago
- Implementation of the u-indexβ12Jul 19, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Benchmark data structures for kmer sets.β13Aug 29, 2026Updated 2 months ago
- Optimal distance lower bound k-mer sampling.β12Jun 19, 2024Updated 2 years ago
- β14Jul 30, 2026Updated 3 months ago
- A Rust implementation of SSHashβ20Oct 19, 2026Updated last week
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transformβ25Nov 20, 2025Updated 11 months ago
- A Rust library providing fully dynamic sets of k-mers with high localityβ47May 13, 2026Updated 5 months ago
- Next Index to Query Kmer Intersectionβ17Feb 1, 2023Updated 3 years ago
- Minimum plain text representation of kmer setsβ20Jan 30, 2025Updated last year
- Space-efficient pseudoalignment with a colored de Bruijn graphβ59Mar 13, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A SIMD-accelerated library to compute random minimizersβ49Updated this week
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.β77Oct 23, 2026Updated last week
- Compacted and colored de Bruijn graph construction and queryingβ100Oct 20, 2026Updated last week
- modular k-mer count matrix and Bloom filter construction for large read collectionsβ90Sep 18, 2026Updated last month
- Compressed, associative, and exact hash table for k-mersβ11Oct 15, 2026Updated 2 weeks ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmerβ36Aug 4, 2021Updated 5 years ago
- Rust library for processing sequencing reads.β25Sep 2, 2024Updated 2 years ago
- Contains the description of a file format to store kmers and associated valuesβ34Aug 17, 2022Updated 4 years ago
- compacted de Bruijn graph construction in low memoryβ102Nov 4, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fast, Cache-Efficient, and Scalable Queries on Pangenomesβ46Mar 9, 2026Updated 7 months ago
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)β58Mar 4, 2024Updated 2 years ago
- KmerCamelπ« provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.β20Oct 1, 2026Updated 3 weeks ago
- β21Dec 26, 2025Updated 10 months ago
- Iterate k-min-mers from a DNA sequence in Rustβ13Apr 8, 2024Updated 2 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLogβ23Updated this week
- Building the compacted de Bruijn graph efficiently from references or reads.β100Oct 1, 2026Updated 3 weeks ago
- A repository for generating strobemers and evalautionβ79Apr 16, 2024Updated 2 years ago
- Pairwise nucleotide alignment benchmark of Rust bindingsβ32Jul 27, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Iterate over minimizers of a DNA sequenceβ34Jul 12, 2024Updated 2 years ago
- REINDEER REad Index for abuNDancE quERyβ57Jul 6, 2025Updated last year
- Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphsβ227Aug 11, 2026Updated 2 months ago
- nimble aligner that will map your reads to the references on a laptopβ11Jun 29, 2017Updated 9 years ago
- Pan-Genomic Matching Statisticsβ59Apr 3, 2024Updated 2 years ago
- β28Jun 16, 2026Updated 4 months ago
- How many distinct k-mers are there in a sequence?β11Feb 4, 2026Updated 8 months ago