will-rowe / genome-sketchingLinks
online notebooks for a review of genome sketching
☆61Updated 5 years ago
Alternatives and similar repositories for genome-sketching
Users that are interested in genome-sketching are comparing it to the libraries listed below
Sorting:
- REINDEER REad Index for abuNDancE quERy☆57Updated last month
- Estimating k-mer coverage histogram of genomics data☆77Updated last year
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Pan-Genomic Matching Statistics☆53Updated last year
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆66Updated last year
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆41Updated 6 years ago
- Histosketching Using Little Kmers☆57Updated 2 years ago
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆67Updated last month
- Index kmtricks bf matrices☆45Updated 9 months ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆68Updated 10 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- A repository for generating strobemers and evalaution☆79Updated last year
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆52Updated last week
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆28Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated last month
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆54Updated last year
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- A streaming method for mapping nanopore raw signals☆32Updated 3 years ago
- Fast and accurate set similarity estimation via containment min hash☆43Updated last year
- Genome inference from a population reference graph☆97Updated 5 months ago
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- NovoGraph: building whole genome graphs from long-read-based de novo assemblies☆46Updated 4 years ago
- Scripts for implementing read until and other examples.☆32Updated 5 years ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆92Updated 3 months ago