Alternatives and similar repositories for genome-sketching

Users that are interested in genome-sketching are comparing it to the libraries listed below

• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆52Updated last year
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆58Updated 11 months ago
• refresh-bio / kmer-db
  Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…
  ☆91Updated last month
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆54Updated 3 years ago
• will-rowe / groot
  A resistome profiler for Graphing Resistance Out Of meTagenomes
  ☆66Updated 5 years ago
• pfaucon / PBSIM-PacBio-Simulator
  This is an updated mirror of the original PacBio Read Simulator
  ☆38Updated 7 years ago
• ggonnella / gfapy
  Gfapy: a flexible and extensible software library for handling sequence graphs in Python
  ☆67Updated 8 months ago
• morispi / CONSENT
  Scalable long read self-correction and assembly polishing with multiple sequence alignment
  ☆55Updated last year
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆37Updated 2 years ago
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆77Updated last year
• iqbal-lab / Mykrobe-predictor
  Antibiotic resistance predictions in minutes on a laptop
  ☆50Updated 6 years ago
• jermp / fulgor
  ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆50Updated this week
• tlemane / kmindex
  Index kmtricks bf matrices
  ☆44Updated 6 months ago
• thackl / minidot
  Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2
  ☆74Updated 8 years ago
• GATB / dsk
  k-mer counting software
  ☆39Updated 3 years ago
• bcgsc / ntJoin
  🔗Genome assembly scaffolder using minimizer graphs
  ☆83Updated 8 months ago
• JensUweUlrich / Taxor
  Fast and space-efficient taxonomic classification of long reads
  ☆43Updated last month
• wdecoster / nanolyse
  Remove lambda phage reads from a fastq file
  ☆29Updated 2 years ago
• ksahlin / strobemers
  A repository for generating strobemers and evalaution
  ☆78Updated last year
• gtonkinhill / pairsnp
  A set of scripts for calculating pairwise SNP distance
  ☆41Updated 2 years ago
• EvolBioInf / phylonium
  ♥ Fast and Accurate Estimation of Evolutionary Distances
  ☆28Updated 2 months ago
• bcgsc / ntEdit
  ✏️ Genome assembly polishing & SNV detection
  ☆68Updated 4 months ago
• dnbaker / dashing2
  Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.
  ☆64Updated last year
• sanger-pathogens / iva
  de novo virus assembler of Illumina paired reads
  ☆56Updated 4 years ago
• hzi-bifo / Haploflow
  ☆31Updated last year
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆76Updated 3 weeks ago
• bluenote-1577 / flopp
  flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.
  ☆38Updated last year
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆39Updated 5 years ago
• SouthGreenPlatform / panache
  Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…
  ☆45Updated 2 years ago
• marbl / harvest
  ☆52Updated 4 years ago