will-rowe / genome-sketchingLinks
online notebooks for a review of genome sketching
☆60Updated 6 years ago
Alternatives and similar repositories for genome-sketching
Users that are interested in genome-sketching are comparing it to the libraries listed below
Sorting:
- REINDEER REad Index for abuNDancE quERy☆56Updated 6 months ago
- Histosketching Using Little Kmers☆56Updated 2 years ago
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆71Updated 5 months ago
- Pan-Genomic Matching Statistics☆55Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated 2 years ago
- A repository for generating strobemers and evalaution☆79Updated last year
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆70Updated last year
- Parallel Sequence to Graph Alignment☆36Updated 3 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- k-mer counting software☆39Updated 3 years ago
- ☆30Updated last year
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 5 months ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65Updated 5 years ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- Bidirectional WFA (Paper)☆48Updated last year
- Graph-based mapping of long sequences, noisy or HiFi.☆55Updated 5 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆59Updated 3 weeks ago
- ☆44Updated 4 years ago
- my PhD thesis☆36Updated 6 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated last month
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆46Updated 2 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 3 months ago
- MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …☆37Updated 3 years ago
- ☆35Updated 5 years ago