shenwei356 / unikmerLinks
A versatile toolkit for k-mers with taxonomic information
☆81Updated last year
Alternatives and similar repositories for unikmer
Users that are interested in unikmer are comparing it to the libraries listed below
Sorting:
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last month
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆50Updated last month
- Generate unique KMERs for every contig in a FASTA file☆48Updated 2 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 2 years ago
- An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.☆37Updated 2 months ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆59Updated last year
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Visualize whole genome alignments as linear maps☆73Updated this week
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆58Updated last year
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆61Updated 11 months ago
- CRyPTIC data processing pipelines☆34Updated last year
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆25Updated 3 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 4 years ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- ☆31Updated last year
- A local-haplotagging-based small and structural variant caller☆78Updated last week
- Simple bacterial assembly and annotation pipeline☆75Updated last week
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 9 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆64Updated last month
- Filter SAM file for soft and hard clipped alignments☆51Updated last year
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆50Updated 7 years ago
- orthology assignment using phylogenetic and network analyses☆45Updated 5 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆58Updated last year
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆54Updated this week
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 2 months ago