shenwei356 / unikmerLinks
A versatile toolkit for k-mers with taxonomic information
β80Updated 2 months ago
Alternatives and similar repositories for unikmer
Users that are interested in unikmer are comparing it to the libraries listed below
Sorting:
- π coverage extraction from BAM/CRAM files, supporting targets π Ββ64Updated 3 weeks ago
- A nextflow pipeline for decontamination of short reads, long reads and contigsβ55Updated 4 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the originalβ51Updated 3 years ago
- β31Updated last year
- VIRULIGN: fast codon-correct alignment and annotation of viral genomesβ35Updated 4 years ago
- Reference-guided multiple sequence alignment of viral genomesβ70Updated 2 weeks ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.β68Updated last week
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio readsβ63Updated last year
- Visualize whole genome alignments as linear mapsβ73Updated 3 months ago
- orthology assignment using phylogenetic and network analysesβ49Updated 3 weeks ago
- An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.β38Updated last month
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for aβ¦β50Updated 7 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rateβ30Updated 3 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparisonβ59Updated last year
- Pan-Genomic Matching Statisticsβ54Updated last year
- Full-length de novo viral haplotype reconstruction from noisy long readsβ21Updated 2 years ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.β48Updated 3 weeks ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2β76Updated 9 years ago
- Generate unique KMERs for every contig in a FASTA fileβ48Updated 3 years ago
- seqfu - Sequece Fastx Utilitiesβ122Updated last month
- Scripts and programs for the Holt Lab's MinION desktopβ32Updated 5 years ago
- β29Updated 4 years ago
- Creating alignment plots from bam filesβ67Updated last week
- In-depth characterization and annotation of differences between two sets of DNA sequencesβ63Updated 5 years ago
- Trimming tool for Oxford Nanopore sequence dataβ22Updated 4 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Royeβ¦β58Updated 4 years ago
- Protein hint generation pipeline for gene finding in eukaryotic genomesβ60Updated 2 years ago
- Error correction of ONT transcript readsβ58Updated 2 years ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence dataβ59Updated last month
- SHOOT.bio - the phylogenetic search engineβ27Updated 2 years ago