ksahlin / strobealignLinks
Aligns short reads using dynamic seed size with strobemers
☆185Updated this week
Alternatives and similar repositories for strobealign
Users that are interested in strobealign are comparing it to the libraries listed below
Sorting:
- Assembled Genomes Compressor☆175Updated last year
- Read Until client library for Nanopore Sequencing☆107Updated last year
- A fast whole-genome aligner based on de Bruijn graphs☆154Updated 5 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆209Updated 2 months ago
- Pairwise whole genome aligner☆222Updated 2 weeks ago
- Visualise and analyse nanopore (ONT) raw signals☆125Updated last week
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆152Updated last week
- ☆121Updated last month
- Research release basecalling models and configurations☆117Updated 6 months ago
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆86Updated 7 months ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆134Updated last month
- Long-read mock community experiments☆104Updated 4 years ago
- Constructing a pangenome gene graph☆200Updated 4 months ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆107Updated 6 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 2 months ago
- A list of software for pangenomics☆164Updated last week
- a tool for inferring species tree from sequencing reads☆155Updated last week
- Yet another k-mer analyzer☆152Updated 3 weeks ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- Analysis components from Oxford Nanopore Research☆96Updated last year
- accurate LiftOver tool for new genome assemblies☆145Updated last year
- ☆80Updated 5 years ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆163Updated this week
- A fast K-mer counter for high-fidelity shotgun datasets☆136Updated 3 months ago
- Nanopore data assembler☆162Updated 3 years ago
- The ARTIC fieldbioinformatics pipeline☆127Updated this week
- Pangenome-based genome inference☆152Updated 2 weeks ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 3 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆148Updated 2 months ago
- OPERA-MS - Hybrid Metagenomic Assembler☆100Updated last year