Aligns short reads using dynamic seed size with strobemers
☆202Jun 26, 2026Updated this week
Alternatives and similar repositories for strobealign
Users that are interested in strobealign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A repository for generating strobemers and evalaution☆79Apr 16, 2024Updated 2 years ago
- A fast seed-embed-extend based sequence mapper and aligner☆23Aug 28, 2024Updated last year
- Space-efficient pseudoalignment with a colored de Bruijn graph☆56Mar 13, 2025Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆312Feb 3, 2026Updated 4 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆254May 13, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Genome size estimation from long read overlaps☆92Jun 22, 2026Updated last week
- base-accurate DNA sequence alignments using WFA and mashmap3☆217Jun 21, 2026Updated last week
- Assembled Genomes Compressor☆183May 6, 2026Updated last month
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- K-mer substring space decomposition☆44May 27, 2026Updated last month
- WFA-lib: Wavefront alignment algorithm library v2☆218Mar 18, 2026Updated 3 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jun 24, 2026Updated last week
- Efficient low-divergence mapping of long reads in minimizer space☆69Oct 7, 2023Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆67Apr 10, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆47May 10, 2023Updated 3 years ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 10 months ago
- Align proteins to genomes with splicing and frameshift☆405Jan 5, 2026Updated 5 months ago
- Long read / genome alignment software☆325Dec 16, 2025Updated 6 months ago
- Fast and scalable nanopore adaptive sampling☆36Jun 6, 2023Updated 3 years ago
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆140Jun 23, 2024Updated 2 years ago
- Fast and exact gap-affine partial order alignment☆68Apr 25, 2026Updated 2 months ago
- ☆67Apr 9, 2024Updated 2 years ago
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆106Jun 16, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆74Apr 1, 2026Updated 2 months ago
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆77Jun 17, 2024Updated 2 years ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆216Apr 24, 2026Updated 2 months ago
- Sequence-to-graph mapper and graph generator☆482Aug 11, 2025Updated 10 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆179Apr 6, 2026Updated 2 months ago
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- A complete diploid human genome☆152Jun 23, 2026Updated last week
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆103May 6, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Apr 20, 2026Updated 2 months ago
- BWT construction and search☆129Jan 14, 2026Updated 5 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated last month
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆198Mar 8, 2022Updated 4 years ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆89Mar 12, 2026Updated 3 months ago
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆55Jun 22, 2026Updated last week