ksahlin / strobealignLinks
Aligns short reads using dynamic seed size with strobemers
☆189Updated this week
Alternatives and similar repositories for strobealign
Users that are interested in strobealign are comparing it to the libraries listed below
Sorting:
- Assembled Genomes Compressor☆176Updated last year
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆154Updated this week
- A list of software for pangenomics☆166Updated 2 weeks ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆210Updated 2 weeks ago
- A fast whole-genome aligner based on de Bruijn graphs☆157Updated 6 months ago
- Read Until client library for Nanopore Sequencing☆107Updated last year
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆98Updated 9 months ago
- Yet another k-mer analyzer☆157Updated last month
- Long-read mock community experiments☆104Updated 4 years ago
- Visualise and analyse nanopore (ONT) raw signals☆127Updated last month
- accurate LiftOver tool for new genome assemblies☆147Updated last year
- ☆121Updated last week
- Pairwise whole genome aligner☆225Updated last week
- Interactive quality assessment of genome assemblies☆117Updated last month
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆190Updated last week
- Nanopore data assembler☆164Updated 3 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆121Updated 3 months ago
- Research release basecalling models and configurations☆117Updated 8 months ago
- a tool for inferring species tree from sequencing reads☆156Updated last month
- Constructing a pangenome gene graph☆203Updated 5 months ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆109Updated this week
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆131Updated last month
- Analysis components from Oxford Nanopore Research☆96Updated last year
- Pangenome-based genome inference☆153Updated last month
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆166Updated last week
- The ARTIC fieldbioinformatics pipeline☆128Updated 3 weeks ago
- Pipeline to convert a haploid assembly into diploid☆110Updated last year
- OPERA-MS - Hybrid Metagenomic Assembler☆99Updated last year
- ☆81Updated 5 years ago