ksahlin / strobealign
Aligns short reads using dynamic seed size with strobemers
☆164Updated last week
Alternatives and similar repositories for strobealign:
Users that are interested in strobealign are comparing it to the libraries listed below
- Assembled Genomes Compressor☆159Updated 2 months ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆67Updated 2 years ago
- Nanopore data assembler☆143Updated 2 years ago
- ☆108Updated this week
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆119Updated this week
- Pairwise whole genome aligner☆147Updated last month
- A fast K-mer counter for high-fidelity shotgun datasets☆123Updated this week
- base-accurate DNA sequence alignments using WFA and mashmap3☆182Updated this week
- A complete diploid human genome☆112Updated last month
- Research release basecalling models and configurations☆107Updated 7 months ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆135Updated 3 weeks ago
- A genome completeness evaluation tool based on miniprot☆190Updated 4 months ago
- a tool for inferring species tree from sequencing reads☆146Updated this week
- Yet another k-mer analyzer☆126Updated 10 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- List of genome assembly tools☆58Updated 2 weeks ago
- Constructing a pangenome gene graph☆179Updated 7 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆119Updated 3 weeks ago
- Read Until client library for Nanopore Sequencing☆103Updated 4 months ago
- ☆131Updated 2 weeks ago
- Pangenome-based genome inference☆121Updated this week
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆70Updated this week
- A tool for Racon polishing of miniasm assemblies☆73Updated 3 years ago
- Long read aligner☆115Updated last year
- accurate LiftOver tool for new genome assemblies☆119Updated 6 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆141Updated this week
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆156Updated last year
- Quality control tools for nanopore sequencing data☆100Updated 3 months ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆88Updated 4 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆111Updated last month