ksahlin / strobealignLinks
Aligns short reads using dynamic seed size with strobemers
☆181Updated this week
Alternatives and similar repositories for strobealign
Users that are interested in strobealign are comparing it to the libraries listed below
Sorting:
- Assembled Genomes Compressor☆169Updated 11 months ago
- Read Until client library for Nanopore Sequencing☆106Updated last year
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆150Updated 3 weeks ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆206Updated last month
- Research release basecalling models and configurations☆115Updated 5 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆153Updated 3 months ago
- a tool for inferring species tree from sequencing reads☆152Updated 3 weeks ago
- Pairwise whole genome aligner☆196Updated 2 weeks ago
- Long-read mock community experiments☆105Updated 4 years ago
- A list of software for pangenomics☆134Updated last week
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- accurate LiftOver tool for new genome assemblies☆137Updated last year
- Constructing a pangenome gene graph☆196Updated 2 months ago
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆84Updated 6 months ago
- Interactive quality assessment of genome assemblies☆113Updated 5 months ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆105Updated 5 months ago
- ☆79Updated 5 years ago
- Visualise and analyse nanopore (ONT) raw signals☆122Updated last month
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆178Updated last month
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆52Updated 11 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆119Updated 2 weeks ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆130Updated last week
- ☆119Updated last week
- Nanopore data assembler☆161Updated 3 years ago
- OPERA-MS - Hybrid Metagenomic Assembler☆100Updated last year
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆114Updated 4 months ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆162Updated this week
- Yet another k-mer analyzer☆149Updated 3 weeks ago
- Analysis components from Oxford Nanopore Research☆95Updated last year
- Ultra-fast preprocessing and quality control for long-read sequencing data☆191Updated last month