Aligns short reads using dynamic seed size with strobemers
☆203Jul 18, 2026Updated this week
Alternatives and similar repositories for strobealign
Users that are interested in strobealign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A repository for generating strobemers and evalaution☆79Apr 16, 2024Updated 2 years ago
- A fast seed-embed-extend based sequence mapper and aligner☆23Aug 28, 2024Updated last year
- Space-efficient pseudoalignment with a colored de Bruijn graph☆57Mar 13, 2025Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆314Feb 3, 2026Updated 5 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆259May 13, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- K-mer substring space decomposition☆44May 27, 2026Updated last month
- base-accurate DNA sequence alignments using WFA and mashmap3☆219Jun 21, 2026Updated last month
- Assembled Genomes Compressor☆186Jul 13, 2026Updated last week
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- WFA-lib: Wavefront alignment algorithm library v2☆223Updated this week
- Strain-level haplotyping for metagenomes with short or long-reads.☆69Apr 10, 2025Updated last year
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jun 24, 2026Updated 3 weeks ago
- Efficient low-divergence mapping of long reads in minimizer space☆69Oct 7, 2023Updated 2 years ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆47May 10, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A new high-resolution long-read metagenome assembler for even noisy reads☆157Jul 3, 2026Updated 2 weeks ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆60Jul 5, 2026Updated 2 weeks ago
- Long read / genome alignment software☆328Dec 16, 2025Updated 7 months ago
- Align proteins to genomes with splicing and frameshift☆408Jan 5, 2026Updated 6 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 11 months ago
- Fast and scalable nanopore adaptive sampling☆36Jun 6, 2023Updated 3 years ago
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆142Jun 23, 2024Updated 2 years ago
- ☆67Apr 9, 2024Updated 2 years ago
- Fast and exact gap-affine partial order alignment☆69Apr 25, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆106Updated this week
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆75Apr 1, 2026Updated 3 months ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆77Jun 17, 2024Updated 2 years ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆218Apr 24, 2026Updated 2 months ago
- Sequence-to-graph mapper and graph generator☆483Aug 11, 2025Updated 11 months ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 4 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆180Apr 6, 2026Updated 3 months ago
- Fast DNA search and [host] depletion using minimizers☆117Updated this week
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- BWT construction and search☆129Jan 14, 2026Updated 6 months ago
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆107May 6, 2026Updated 2 months ago
- A complete diploid human genome☆153Jun 23, 2026Updated 3 weeks ago
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆198Mar 8, 2022Updated 4 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Apr 20, 2026Updated 3 months ago
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago