ksahlin / strobealignLinks
Aligns short reads using dynamic seed size with strobemers
☆173Updated last week
Alternatives and similar repositories for strobealign
Users that are interested in strobealign are comparing it to the libraries listed below
Sorting:
- Assembled Genomes Compressor☆166Updated 7 months ago
- ☆113Updated 2 months ago
- Pairwise whole genome aligner☆174Updated last month
- A fast K-mer counter for high-fidelity shotgun datasets☆131Updated last month
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆124Updated last week
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆139Updated 2 weeks ago
- Read Until client library for Nanopore Sequencing☆104Updated 9 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆151Updated last week
- base-accurate DNA sequence alignments using WFA and mashmap3☆193Updated last week
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆155Updated last month
- Pangenome-based genome inference☆130Updated 3 weeks ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 3 months ago
- a tool for inferring species tree from sequencing reads☆150Updated 4 months ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆105Updated last month
- Research release basecalling models and configurations☆113Updated last month
- A complete diploid human genome☆121Updated 6 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆171Updated 4 years ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆110Updated last month
- A list of software for pangenomics☆118Updated last week
- Visualise and analyse nanopore (ONT) raw signals☆117Updated last week
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Updated 2 years ago
- Variant calling tool for long-read sequencing data☆110Updated 3 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆145Updated 2 months ago
- Fast and accurate coordinate conversion between assemblies☆113Updated 3 months ago
- Long read aligner☆115Updated 2 years ago
- accurate LiftOver tool for new genome assemblies☆132Updated 11 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆111Updated 3 weeks ago
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆80Updated 2 months ago
- Analysis components from Oxford Nanopore Research☆93Updated 10 months ago