A pairwise sequence aligner written in Rust
☆153May 22, 2026Updated 2 months ago
Alternatives and similar repositories for astar-pairwise-aligner
Users that are interested in astar-pairwise-aligner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆142Jun 23, 2024Updated 2 years ago
- Rust bindings to minimap2 library☆113May 3, 2026Updated 3 months ago
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆184Sep 19, 2024Updated last year
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 3 years ago
- Benchmarking pairwise aligners☆37Feb 8, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Fast and exact gap-affine partial order alignment☆70Apr 25, 2026Updated 3 months ago
- WFA-lib: Wavefront alignment algorithm library v2☆223Aug 7, 2026Updated last week
- A reimplementation of the WaveFront Alignment algorithm at low memory☆51May 22, 2024Updated 2 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆222Updated this week
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- Rust implementation of the wavefront alignment algorithm☆14Jul 4, 2022Updated 4 years ago
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆142Feb 14, 2025Updated last year
- Compacted and colored de Bruijn graph construction and querying☆99Jul 1, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Tearing through FASTA/Q sequences☆38Jul 9, 2026Updated last month
- Fast approximate string searching☆162Updated this week
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 11 months ago
- Enumerating bubbles in pangenome graphs☆16Updated this week
- A very fast interval tree data structure☆135Feb 3, 2025Updated last year
- A repository for generating strobemers and evalaution☆79Apr 16, 2024Updated 2 years ago
- An extensible and performant aligner and read mapper☆100Jul 27, 2026Updated 2 weeks ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- GFA visualizer, GPU-accelerated using Vulkan☆79Aug 2, 2022Updated 4 years ago
- Fast FASTX parsing and k-mer methods in Rust☆214Jun 22, 2026Updated last month
- bioinformatics toolkit in rust☆107Jul 16, 2026Updated 3 weeks ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆77Jun 17, 2024Updated 2 years ago
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- implicit pangenome graph☆110Aug 8, 2026Updated last week
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40May 4, 2026Updated 3 months ago
- BWT construction and search☆130Jan 14, 2026Updated 7 months ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Split k-mer analysis – version 2☆105Jul 9, 2026Updated last month
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 2 months ago
- ☆102Apr 22, 2024Updated 2 years ago
- A fast approximate aligner for long DNA sequences☆289Oct 11, 2024Updated last year
- ☆31Mar 27, 2024Updated 2 years ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Pairwise whole genome aligner☆243Jul 29, 2026Updated 2 weeks ago