dnbaker / dashing2Links
Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.
☆66Updated last year
Alternatives and similar repositories for dashing2
Users that are interested in dashing2 are comparing it to the libraries listed below
Sorting:
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆52Updated last week
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- Pan-Genomic Matching Statistics☆53Updated last year
- A repository for generating strobemers and evalaution☆79Updated last year
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- Banded Striped DNA Sequence Alignment☆47Updated 2 years ago
- ☆67Updated last year
- REINDEER REad Index for abuNDancE quERy☆57Updated last month
- A versatile compressor of third generation sequencing reads.☆51Updated last year
- Efficient low-divergence mapping of long reads in minimizer space☆67Updated last year
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 5 months ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆54Updated last year
- Mumemto: multi-MUM and MEM finding across pangenomes☆108Updated last month
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 5 months ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- BWT construction and search☆116Updated last month
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆44Updated 2 months ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆64Updated 2 weeks ago
- K-mer substring space decomposition☆42Updated last year
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆53Updated 5 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated last month
- ☆30Updated last year
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 9 months ago
- ☆63Updated 2 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆71Updated 6 years ago
- 1-code framework: docs, C-library, and tools☆21Updated 3 weeks ago