Alternatives and similar repositories for dashing2:

Users that are interested in dashing2 are comparing it to the libraries listed below

• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆52Updated last year
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated 11 months ago
• vikshiv / mumemto
  Mumemto: multi-MUM and MEM finding across pangenomes
  ☆79Updated 2 weeks ago
• mourisl / centrifuger
  Classifier for metagenomic sequences using FM-index with run-block compressed BWT.
  ☆58Updated this week
• lh3 / lv89
  C implementation of the Landau-Vishkin algorithm
  ☆35Updated 3 years ago
• refresh-bio / colord
  A versatile compressor of third generation sequencing reads.
  ☆50Updated last year
• maxrossi91 / moni
  MONI: A Pangenomic Index for Finding MEMs
  ☆37Updated last month
• Kirk3gaard / 2023-basecalling-benchmarks
  ☆30Updated last year
• ruanjue / bsalign
  Banded Striped DNA Sequence Alignment
  ☆45Updated 2 years ago
• morispi / CONSENT
  Scalable long read self-correction and assembly polishing with multiple sequence alignment
  ☆55Updated last year
• rvicedomini / strainberry
  Automated strain separation of low-complexity metagenomes
  ☆51Updated 3 years ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆49Updated 2 months ago
• jermp / fulgor
  ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆50Updated last week
• AntonBankevich / LJA
  ☆115Updated last month
• jts / assembly_accuracy
  tools for assessing the accuracy of genome assemblies
  ☆34Updated last year
• seryrzu / unialigner
  ☆65Updated last year
• VGP / vgp-tools
  ☆28Updated 3 weeks ago
• ekimb / mapquik
  Efficient low-divergence mapping of long reads in minimizer space
  ☆65Updated last year
• bacpop / ska.rust
  Split k-mer analysis – version 2
  ☆83Updated 2 months ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• pangenome / impg
  implicit pangenome graph
  ☆58Updated this week
• thegenemyers / ONEcode
  1-code framework: docs, C-library, and tools
  ☆16Updated 3 months ago
• ksahlin / strobemers
  A repository for generating strobemers and evalaution
  ☆78Updated last year
• rrwick / Rebaler
  reference-based long read assemblies of bacterial genomes
  ☆49Updated 3 years ago
• combogenomics / medusa
  A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.
  ☆44Updated 4 years ago
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆74Updated 4 years ago
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆78Updated last year
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆36Updated last year
• EvolBioInf / phylonium
  ♥ Fast and Accurate Estimation of Evolutionary Distances
  ☆27Updated 3 weeks ago