Kmer-File-Format / kff-referenceLinks
Contains the description of a file format to store kmers and associated values
☆32Updated 2 years ago
Alternatives and similar repositories for kff-reference
Users that are interested in kff-reference are comparing it to the libraries listed below
Sorting:
- ☆17Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆24Updated last month
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 7 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- Iterate over minimizers of a DNA sequence☆29Updated 10 months ago
- A long read simulator based on badread idea☆22Updated 2 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last week
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆50Updated this week
- ☆25Updated 4 years ago
- Differential k-mer analysis☆36Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 2 months ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 7 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Variant call verification☆16Updated 3 weeks ago
- ☆28Updated last month
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆33Updated last year
- Index kmtricks bf matrices☆44Updated 6 months ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆16Updated 6 years ago
- Wavefront alignment algorithm (WFA) in Golang☆29Updated 7 months ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- ☆28Updated 8 months ago
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 6 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆45Updated 8 months ago
- Rust wrapper for the next generation (still currently in C++)☆25Updated this week
- Fast and exact gap-affine partial order alignment☆51Updated last month
- Find Unique genomic Regions☆29Updated 2 months ago