Kmer-File-Format / kff-referenceLinks
Contains the description of a file format to store kmers and associated values
☆34Updated 3 years ago
Alternatives and similar repositories for kff-reference
Users that are interested in kff-reference are comparing it to the libraries listed below
Sorting:
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- A small, auxiliary index to massively improve parallel fastq parsing☆30Updated 3 weeks ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆28Updated 9 months ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆59Updated last month
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- ☆24Updated 5 months ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- A k-mer search engine for all Sequence Read Archive public accessions☆36Updated last year
- ☆14Updated 5 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 5 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Updated 3 weeks ago
- Indel-aware consensus for aligned BAM☆21Updated 5 months ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- ☆15Updated 3 years ago
- ☆28Updated 9 months ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Updated 4 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 10 months ago
- Next Index to Query Kmer Intersection☆17Updated 3 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- A Rust library providing fully dynamic sets of k-mers with high locality☆46Updated 2 weeks ago
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 6 months ago
- Linear-time, low-memory construction of variation graphs☆20Updated 6 years ago
- Differential k-mer analysis☆39Updated 2 years ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆17Updated 6 years ago
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 10 months ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- A long read simulator based on badread idea☆22Updated 3 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 4 months ago