Kmer-File-Format / kff-reference
Contains the description of a file format to store kmers and associated values
☆32Updated 2 years ago
Alternatives and similar repositories for kff-reference:
Users that are interested in kff-reference are comparing it to the libraries listed below
- Iterate over minimizers of a DNA sequence☆28Updated 9 months ago
- ☆17Updated last year
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 6 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆24Updated last week
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- A long read simulator based on badread idea☆22Updated 2 years ago
- Differential k-mer analysis☆36Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆50Updated this week
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆33Updated last year
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 11 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 5 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 6 months ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Indel-aware consensus for aligned BAM☆21Updated last month
- ☆28Updated 3 weeks ago
- ☆28Updated 7 months ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- ☆17Updated 4 years ago
- Sketch-based surveillance platform☆13Updated 4 months ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago
- ☆45Updated 3 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆21Updated last year
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆14Updated 7 years ago
- Variant call verification☆16Updated 3 months ago
- Wavefront alignment algorithm (WFA) in Golang☆29Updated 6 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 3 years ago