smarco / WFA-paper
Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment
☆201Updated 2 years ago
Alternatives and similar repositories for WFA-paper:
Users that are interested in WFA-paper are comparing it to the libraries listed below
- Aligns short reads using dynamic seed size with strobemers☆160Updated this week
- Program for aligning DNA sequences, a pairwise aligner.☆206Updated last month
- WFA-lib: Wavefront alignment algorithm library v2☆164Updated this week
- base-accurate DNA sequence alignments using WFA and mashmap3☆180Updated this week
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆217Updated 5 months ago
- Graphical Fragment Assembly (GFA) Format Specification☆203Updated 4 months ago
- a long read simulator that can imitate many types of read problems☆193Updated 5 months ago
- A fast K-mer counter for high-fidelity shotgun datasets☆123Updated 2 weeks ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆198Updated last week
- A minimap2 frontend for PacBio native data formats☆178Updated last month
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago
- Long read / genome alignment software☆268Updated 2 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆273Updated 3 months ago
- Assembled Genomes Compressor☆159Updated last month
- Pairwise whole genome aligner☆143Updated this week
- SIMD partial order alignment tool/library☆163Updated last year
- Fast and frugal disk based k-mer counter☆281Updated last month
- Global alignment and alignment extension☆130Updated last year
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆119Updated this week
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆252Updated last week
- Nanopore data assembler☆140Updated 2 years ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆228Updated last year
- Fast and accurately polish the genome generated by long reads.☆215Updated last week
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆137Updated last year
- Code examples of fast and simple k-mer counters for tutorial purposes☆167Updated 4 years ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆251Updated last month
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆207Updated last year
- Filtering and trimming of long read sequencing data☆197Updated 2 years ago
- Genome browser and variant annotation☆289Updated this week
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆131Updated last month