smarco / WFA-paperLinks
Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment
☆199Updated 3 years ago
Alternatives and similar repositories for WFA-paper
Users that are interested in WFA-paper are comparing it to the libraries listed below
Sorting:
- SIMD partial order alignment tool/library☆170Updated 2 weeks ago
- Graphical Fragment Assembly (GFA) Format Specification☆214Updated last year
- ☆273Updated 2 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆237Updated last year
- Long read / genome alignment software☆300Updated 11 months ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆222Updated 2 months ago
- WFA-lib: Wavefront alignment algorithm library v2☆193Updated 4 months ago
- Program for aligning DNA sequences, a pairwise aligner.☆227Updated 3 months ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Updated 2 years ago
- Global alignment and alignment extension☆135Updated 2 years ago
- Randomly subsample sequencing reads or alignments☆242Updated last week
- VGP repository for the genome assembly working group☆193Updated 4 months ago
- Aligns short reads using dynamic seed size with strobemers☆178Updated last week
- A fast K-mer counter for high-fidelity shotgun datasets☆131Updated 3 weeks ago
- CLI tool for flexible and fast adaptive sampling on ONT sequencers☆188Updated 5 months ago
- Assembled Genomes Compressor☆168Updated 10 months ago
- De novo genome assembler for long uncorrected reads☆226Updated last year
- base-accurate DNA sequence alignments using WFA and mashmap3☆203Updated 2 weeks ago
- PEPPER-Margin-DeepVariant☆252Updated last year
- Code examples of fast and simple k-mer counters for tutorial purposes☆170Updated 5 years ago
- Pairwise whole genome aligner☆191Updated this week
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆150Updated last week
- DRAGEN open-source mapper☆177Updated 2 years ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆162Updated last week
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆304Updated 2 weeks ago
- diploid SNV caller for error-prone reads☆202Updated last year
- Pod5: a high performance file format for nanopore reads.☆165Updated last week
- A minimap2 frontend for PacBio native data formats☆204Updated 3 weeks ago
- A fast approximate aligner for long DNA sequences☆283Updated 11 months ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆239Updated last year