Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment
☆199Mar 8, 2022Updated 4 years ago
Alternatives and similar repositories for WFA-paper
Users that are interested in WFA-paper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A reimplementation of the WaveFront Alignment algorithm at low memory☆51May 22, 2024Updated 2 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- WFA-lib: Wavefront alignment algorithm library v2☆225Aug 7, 2026Updated 3 weeks ago
- ☆290Dec 29, 2025Updated 8 months ago
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆142Jun 23, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57May 29, 2024Updated 2 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆222Aug 27, 2026Updated last week
- Adaptive semi-global banded alignment on string graphs☆66May 4, 2018Updated 8 years ago
- C implementation of the Landau-Vishkin algorithm☆36Apr 8, 2022Updated 4 years ago
- Implicit Interval Tree with Interpolation Index☆43Jul 13, 2022Updated 4 years ago
- Global alignment and alignment extension☆143Jun 27, 2023Updated 3 years ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆146Jun 26, 2026Updated 2 months ago
- Parallel Sequence to Graph Alignment☆35Nov 26, 2022Updated 3 years ago
- AStarix: Fast and Optimal Sequence-to-Graph Aligner☆74Dec 25, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆184Sep 19, 2024Updated last year
- Sequence-to-graph mapper and graph generator☆487Aug 11, 2025Updated last year
- Long read / genome alignment software☆330Dec 16, 2025Updated 8 months ago
- Fast and accurate genomic distances using HyperLogLog☆162Jan 19, 2023Updated 3 years ago
- Assembled Genomes Compressor☆188Jul 22, 2026Updated last month
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- A repository for generating strobemers and evalaution☆79Apr 16, 2024Updated 2 years ago
- An efficient index for the colored, compacted, de Bruijn graph☆112Jun 19, 2026Updated 2 months ago
- Graph-based mapping of long sequences, noisy or HiFi.☆55Oct 5, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 5 years ago
- De Bruijn graph representation in low memory☆36Jul 6, 2024Updated 2 years ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆97Aug 16, 2026Updated 2 weeks ago
- REINDEER REad Index for abuNDancE quERy☆56Jul 6, 2025Updated last year
- A fast K-mer counter for high-fidelity shotgun datasets☆147Jan 19, 2026Updated 7 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆253Dec 16, 2025Updated 8 months ago
- Benchmarking pairwise aligners☆38Aug 26, 2026Updated last week
- Yet another k-mer analyzer☆174Dec 30, 2025Updated 8 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code examples of fast and simple k-mer counters for tutorial purposes☆175Mar 10, 2020Updated 6 years ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆77Jun 17, 2024Updated 2 years ago
- Graphical Fragment Assembly (GFA) Format Specification☆222Aug 21, 2024Updated 2 years ago
- The D4 Quantitative Data Format☆175Nov 28, 2025Updated 9 months ago
- GBWT-based handle graph☆35Aug 19, 2026Updated 2 weeks ago
- A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)☆170May 28, 2024Updated 2 years ago
- A pairwise sequence aligner written in Rust☆153May 22, 2026Updated 3 months ago