smarco / WFA-paper
Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment
☆200Updated 2 years ago
Alternatives and similar repositories for WFA-paper:
Users that are interested in WFA-paper are comparing it to the libraries listed below
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆218Updated 6 months ago
- WFA-lib: Wavefront alignment algorithm library v2☆167Updated last week
- Aligns short reads using dynamic seed size with strobemers☆164Updated last week
- Long read / genome alignment software☆272Updated 3 months ago
- A fast K-mer counter for high-fidelity shotgun datasets☆123Updated this week
- Graphical Fragment Assembly (GFA) Format Specification☆204Updated 5 months ago
- Program for aligning DNA sequences, a pairwise aligner.☆206Updated last month
- A minimap2 frontend for PacBio native data formats☆181Updated 2 months ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆201Updated this week
- De novo genome assembler for long uncorrected reads☆213Updated last year
- base-accurate DNA sequence alignments using WFA and mashmap3☆182Updated this week
- ☆264Updated 2 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago
- SIMD partial order alignment tool/library☆164Updated last year
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆119Updated this week
- a long read simulator that can imitate many types of read problems☆200Updated 6 months ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆257Updated last month
- DRAGEN open-source mapper☆169Updated last year
- Toolset for SV simulation, comparison and filtering☆370Updated last year
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆116Updated 10 months ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Updated 2 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆170Updated 3 years ago
- Pairwise whole genome aligner☆147Updated last month
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆274Updated 3 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆156Updated last year
- GenMap - Fast and Exact Computation of Genome Mappability☆104Updated 7 months ago
- Randomly subsample sequencing reads or alignments☆221Updated 2 months ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆296Updated 10 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆212Updated last year
- Genome browser and variant annotation☆293Updated this week