smarco / WFA-paperLinks
Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment
☆200Updated 3 years ago
Alternatives and similar repositories for WFA-paper
Users that are interested in WFA-paper are comparing it to the libraries listed below
Sorting:
- Long read / genome alignment software☆289Updated 7 months ago
- Aligns short reads using dynamic seed size with strobemers☆172Updated this week
- SIMD partial order alignment tool/library☆172Updated last year
- Graphical Fragment Assembly (GFA) Format Specification☆208Updated 10 months ago
- WFA-lib: Wavefront alignment algorithm library v2☆187Updated last month
- ☆269Updated last week
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆124Updated 2 weeks ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆213Updated last month
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆230Updated 10 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆191Updated 2 weeks ago
- a long read simulator that can imitate many types of read problems☆227Updated 11 months ago
- Program for aligning DNA sequences, a pairwise aligner.☆223Updated last week
- A fast K-mer counter for high-fidelity shotgun datasets☆131Updated 2 weeks ago
- Randomly subsample sequencing reads or alignments☆232Updated 6 months ago
- Global alignment and alignment extension☆132Updated 2 years ago
- A minimap2 frontend for PacBio native data formats☆197Updated 4 months ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆284Updated last month
- Jasmine: SV Merging Across Samples☆216Updated 6 months ago
- Fast and frugal disk based k-mer counter☆292Updated 6 months ago
- DRAGEN open-source mapper☆175Updated last year
- Assembled Genomes Compressor☆166Updated 7 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆137Updated 2 weeks ago
- Nanopore data assembler☆156Updated 3 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆152Updated 2 weeks ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆281Updated 8 months ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆232Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆169Updated last year
- Research release basecalling models and configurations☆113Updated last month
- De novo genome assembler for long uncorrected reads☆223Updated last year