COMBINE-lab / piscem-inferLinks
☆14Updated 4 months ago
Alternatives and similar repositories for piscem-infer
Users that are interested in piscem-infer are comparing it to the libraries listed below
Sorting:
- Rust wrapper for the next generation (still currently in C++)☆29Updated 5 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- Contains the description of a file format to store kmers and associated values☆34Updated 3 years ago
- Tool to estimate deltas for sequence sets and answer questions about relative contribution☆21Updated 9 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated last year
- A Rust library providing fully dynamic sets of k-mers with high locality☆46Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆27Updated 8 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆35Updated last year
- A minimap2 implementation with binseq inputs☆17Updated 2 weeks ago
- Hidden Markov Model based Copy number caller☆20Updated 2 weeks ago
- The python binding for D4 format☆16Updated 4 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Updated last month
- Singular Genomics Demultiplexing Tool☆16Updated last year
- Python language bindings for bwa☆11Updated last month
- Johns Hopkins University student-led genomics paper discussion group☆13Updated 5 years ago
- Optimal distance lower bound k-mer sampling.☆12Updated last year
- ☆21Updated this week
- ☆14Updated 2 years ago
- ☆24Updated 4 months ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated 2 months ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆23Updated last month
- drunk on perbase pileups and lua expressions☆19Updated last month
- Hierarchical binned indexed data store for on-disk genomic data.☆13Updated 11 months ago
- JTK -- a regional diploid genome assembler☆25Updated last year
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆11Updated 6 years ago
- ☆15Updated 2 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- GBWT-based handle graph☆31Updated 3 weeks ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆27Updated last week