☆15May 22, 2026Updated 2 months ago
Alternatives and similar repositories for piscem-infer
Users that are interested in piscem-infer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Rust implementation of SSHash☆19Jul 2, 2026Updated 3 weeks ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated 2 weeks ago
- ☆12Dec 1, 2021Updated 4 years ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Efficient querying of biological databases☆45Oct 27, 2025Updated 9 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- ☆15Nov 30, 2023Updated 2 years ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆37May 28, 2024Updated 2 years ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Mar 13, 2025Updated last year
- Static Huffman coding☆10Apr 3, 2017Updated 9 years ago
- Building the compacted de Bruijn graph efficiently from references or reads.☆95Updated this week
- ☆20Aug 18, 2020Updated 5 years ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆27Oct 28, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Apr 16, 2016Updated 10 years ago
- Implementation of a Backpack Quotient Filter☆13Jun 24, 2026Updated last month
- Fast interval intersection library☆45Jul 14, 2026Updated 2 weeks ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆18Oct 12, 2025Updated 9 months ago
- Isoform-level functional RNA-Seq analysis 🧬☆39Jul 7, 2026Updated 3 weeks ago
- a lexicographically-based GTF/GFF sorter☆39Jul 21, 2026Updated last week
- RNA-seq Analysis Pipeline Testing and Optimization Resource - Intelligent pipeline selection and comprehensive benchmarking.☆20Apr 28, 2026Updated 3 months ago
- kmer-counter based on kache-hash☆16Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 7 months ago
- Collection of National Science Foundation (NSF) proposal templates: pitches, general applications, etc.☆16Nov 17, 2023Updated 2 years ago
- ☆11Jan 29, 2025Updated last year
- Tool to estimate deltas for sequence sets and answer questions about relative contribution☆21Mar 25, 2025Updated last year
- An experimental tool to find approximate max-cuts in a large graph☆10Apr 28, 2021Updated 5 years ago
- k-mers and the like☆23Updated this week
- The Modular Aligner and The Modular SV Caller☆47Jul 18, 2023Updated 3 years ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆22Updated this week
- SQL-like query language for the SAM/BAM file format☆30Sep 20, 2023Updated 2 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Sep 1, 2020Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated last week
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 3 years ago
- A long read simulator based on badread idea☆23Oct 7, 2022Updated 3 years ago
- A repository for generating strobemers and evalaution☆79Apr 16, 2024Updated 2 years ago