COMBINE-lab / piscem-infer
☆14Updated 6 months ago
Related projects: ⓘ
- Rust wrapper for the next generation (still currently in C++)☆20Updated last month
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated last year
- Johns Hopkins University student-led genomics paper discussion group☆12Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Updated 11 months ago
- The python binding for D4 format☆16Updated 2 years ago
- ☆15Updated 9 months ago
- ☆22Updated 2 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated 5 months ago
- Optimal distance lower bound k-mer sampling.☆12Updated 3 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆22Updated 11 months ago
- Singular Genomics Demultiplexing Tool☆16Updated 6 months ago
- Iterate over minimizers of a DNA sequence☆24Updated 2 months ago
- Contains the description of a file format to store kmers and associated values☆30Updated 2 years ago
- ☆13Updated last year
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 7 months ago
- drunk on perbase pileups and lua expressions☆17Updated last year
- Tool to estimate deltas for sequence sets and answer questions about relative contribution☆21Updated 7 months ago
- Benchmarking pairwise aligners☆35Updated 5 months ago
- JTK -- a regional diploid genome assembler☆23Updated last month
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆21Updated this week
- A FASTA/FASTQ format parser library☆20Updated 6 months ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆10Updated 8 months ago
- ☆9Updated 2 years ago
- Index and query k-mer matrices in BGZF☆12Updated 6 years ago
- Pangenome Graph Variation Format (PGVF)☆18Updated 3 years ago
- ☆25Updated 3 years ago
- convert variation graph alignments to coverage maps over nodes☆20Updated 3 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆27Updated last year
- Population genetics analysis on VG☆16Updated 3 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago