rchikhi / rust-seq2kminmers
Iterate k-min-mers from a DNA sequence in Rust
☆13Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for rust-seq2kminmers
- Next Index to Query Kmer Intersection☆16Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆22Updated 2 weeks ago
- convert variation graph alignments to coverage maps over nodes☆21Updated last week
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Iterate over minimizers of a DNA sequence☆26Updated 4 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆18Updated 3 weeks ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆24Updated 2 months ago
- recompute GFA link overlaps☆25Updated 2 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 3 years ago
- Rust wrapper for the next generation (still currently in C++)☆20Updated this week
- ☆13Updated last year
- Optimal distance lower bound k-mer sampling.☆12Updated 5 months ago
- Minimum plain text representation of kmer sets☆17Updated 2 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆22Updated 7 months ago
- Differential k-mer analysis☆33Updated 9 months ago
- ☆17Updated last year
- ☆14Updated 4 years ago
- Wavefront alignment algorithm (WFA) in Golang☆30Updated 3 weeks ago
- k-mers and the like☆15Updated this week
- Generate interactive dotplot from mummer4 output using plotly☆25Updated 4 years ago
- Utilities to detect and profile `het-kmers`☆11Updated 3 months ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 2 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆16Updated 5 months ago
- A long read simulator based on badread idea☆20Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 6 months ago
- Validation of sycnmers compared to minimizers☆11Updated 4 years ago
- ☆21Updated last month
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 months ago
- ☆32Updated last year