Alternatives and similar repositories for rust-seq2kminmers

Users that are interested in rust-seq2kminmers are comparing it to the libraries listed below

• richarddurbin / syng
  syncmer graphs, and perhaps other sorts of sequence graphs
  ☆21Updated 6 months ago
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆25Updated 2 years ago
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆33Updated 3 years ago
• Malfoy / NIQKI
  Next Index to Query Kmer Intersection
  ☆16Updated 2 years ago
• langmead-lab / vargas
  ☆24Updated last month
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆25Updated 5 months ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆24Updated 3 months ago
• natir / nuc2bit
  ☆14Updated 4 years ago
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆32Updated 2 months ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆24Updated 10 months ago
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆27Updated last year
• ratschlab / tensor-sketch-alignment
  Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.
  ☆13Updated 2 years ago
• natir / rustyread
  A long read simulator based on badread idea
  ☆22Updated 2 years ago
• algbio / matchtigs
  Minimum plain text representation of kmer sets
  ☆16Updated 8 months ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago
• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 4 years ago
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated 4 months ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆37Updated last year
• cschin / wavefront-aln
  A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring
  ☆14Updated 2 years ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆39Updated last year
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated last week
• chfi / gfainject
  ☆17Updated 2 years ago
• nlhepler / spoa-rs
  A rust wrapper for the spoa C++ partial order alignment library
  ☆10Updated 3 months ago
• algbio / SRFAligner
  ☆13Updated last month
• pangenome / pgvf-spec
  Pangenome Graph Variation Format (PGVF)
  ☆19Updated 5 years ago
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 3 years ago
• lh3 / gffio
  ☆32Updated 2 years ago
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆32Updated 4 years ago
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆46Updated last year