ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
☆106Jun 16, 2026Updated 2 weeks ago
Alternatives and similar repositories for ganon
Users that are interested in ganon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆51May 5, 2026Updated 2 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Aug 23, 2023Updated 2 years ago
- genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with…☆171Updated this week
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆217Apr 24, 2026Updated 2 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆312Feb 3, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated 2 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆54Jun 10, 2026Updated 3 weeks ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆254May 13, 2026Updated last month
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jun 24, 2026Updated last week
- A hybrid assembly and MAG recovery pipeline (and more!)☆109Updated this week
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆55Jun 22, 2026Updated last week
- Microbiome classification pipeline☆67May 13, 2025Updated last year
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- Bonsai: Fast, flexible taxonomic analysis and classification☆70Apr 9, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆84Dec 4, 2025Updated 7 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆180Apr 6, 2026Updated 2 months ago
- Aligns short reads using dynamic seed size with strobemers☆202Jun 26, 2026Updated last week
- Fast and space-efficient taxonomic classification of long reads☆45Aug 25, 2025Updated 10 months ago
- Strain resolver for metagenomics☆81Aug 2, 2024Updated last year
- Precise host read removal☆124Apr 13, 2026Updated 2 months ago
- Graph-based assembly phasing☆97Nov 25, 2025Updated 7 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆60May 24, 2026Updated last month
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆75Dec 1, 2025Updated 7 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆180Apr 22, 2026Updated 2 months ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆549Updated this week
- A repository for generating strobemers and evalaution☆79Apr 16, 2024Updated 2 years ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆221May 9, 2026Updated last month
- Read alignment statistics for metagenomics☆399Jun 26, 2026Updated last week
- Finding regions of similarity between plasmids☆17Updated this week
- Histosketching Using Little Kmers☆56May 25, 2023Updated 3 years ago
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Rapid determination of appropriate reference genomes.☆102Jan 22, 2025Updated last year
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆89Mar 12, 2026Updated 3 months ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- A comprehensive prokaryotic genome annotation pipeline☆88Jun 3, 2026Updated last month
- Remove human reads from a sequencing run☆48Updated this week
- seqfu - Sequece Fastx Utilities☆128May 22, 2026Updated last month