ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
☆108Oct 12, 2026Updated this week
Alternatives and similar repositories for ganon
Users that are interested in ganon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆53May 5, 2026Updated 5 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Aug 23, 2023Updated 3 years ago
- genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with…☆175Updated this week
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆221Apr 24, 2026Updated 5 months ago
- TAXnomic Profile Aggregation and STAndardisation☆43May 2, 2026Updated 5 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆54Jun 10, 2026Updated 4 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆325Updated this week
- Fast average nucleotide identity (ANI) calculator for bacterial genomes, MAGs, and contigs. Supports genome comparisons and large-scale d…☆265Updated this week
- A hybrid assembly and MAG recovery pipeline (and more!)☆120Oct 7, 2026Updated last week
- MetagenOmic read Re-Assigner and abundance quantifier☆22Jun 24, 2026Updated 3 months ago
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆55Oct 3, 2026Updated last week
- Microbiome classification pipeline☆67Sep 29, 2026Updated 2 weeks ago
- A high-resolution long-read metagenome assembler for even noisy reads. Myloasm assembles strain-resolved, circular + complete genomes fro…☆173Updated this week
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Bonsai: Fast, flexible taxonomic analysis and classification☆69Apr 9, 2024Updated 2 years ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆186Sep 9, 2026Updated last month
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆86Sep 7, 2026Updated last month
- Fast and space-efficient taxonomic classification of long reads☆46Jul 16, 2026Updated 2 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆71Apr 10, 2025Updated last year
- Aligns short reads using dynamic seed size with strobemers☆209Updated this week
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆234May 9, 2026Updated 5 months ago
- Graph-based assembly phasing☆102Nov 25, 2025Updated 10 months ago
- Strain resolver for metagenomics☆81Aug 2, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆98Updated this week
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆182Aug 10, 2026Updated 2 months ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆78Updated this week
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆556Updated this week
- A repository for generating strobemers and evalaution☆79Apr 16, 2024Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆77Aug 13, 2026Updated 2 months ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 2 months ago
- Rapid determination of appropriate reference genomes.☆103Jan 22, 2025Updated last year
- sunburst plots for taxonomy - working to update Krona☆48Sep 22, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Histosketching Using Little Kmers☆56May 25, 2023Updated 3 years ago
- Read alignment statistics for metagenomics☆406Sep 23, 2026Updated 3 weeks ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- Create a tree using Mash distances☆191Oct 24, 2023Updated 2 years ago
- 🛠️🧬 A Software Framework to Manipulate Assembly Graphs☆22Updated this week
- geNomad: Identification of mobile genetic elements☆337Mar 29, 2026Updated 6 months ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago