Alternatives and similar repositories for rust-mdbg

Users that are interested in rust-mdbg are comparing it to the libraries listed below

• waveygang / wfmash
  base-accurate DNA sequence alignments using WFA and mashmap3
  ☆208Updated 2 months ago
• thegenemyers / FASTGA
  Pairwise whole genome aligner
  ☆222Updated last week
• pjedge / longshot
  diploid SNV caller for error-prone reads
  ☆204Updated last year
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆163Updated this week
• ksahlin / strobealign
  Aligns short reads using dynamic seed size with strobemers
  ☆185Updated this week
• ChaissonLab / LRA
  Long read aligner
  ☆115Updated 2 years ago
• lh3 / gfatools
  Tools for manipulating sequence graphs in the GFA and rGFA formats
  ☆242Updated last year
• mbhall88 / rasusa
  Randomly subsample sequencing reads or alignments
  ☆248Updated this week
• rrwick / Long-read-assembler-comparison
  Benchmarking of long-read assembly tools for bacterial whole genomes
  ☆172Updated 4 years ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆162Updated 3 years ago
• lbcb-sci / raven
  De novo genome assembler for long uncorrected reads
  ☆228Updated 2 years ago
• wdecoster / chopper
  ☆222Updated last week
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆83Updated 3 years ago
• thegenemyers / FASTK
  A fast K-mer counter for high-fidelity shotgun datasets
  ☆135Updated 3 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆200Updated 4 months ago
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆155Updated 2 months ago
• asl / BandageNG
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆152Updated this week
• marbl / Winnowmap
  Long read / genome alignment software
  ☆311Updated last year
• lh3 / yak
  Yet another k-mer analyzer
  ☆152Updated 2 weeks ago
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆107Updated last year
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆153Updated 5 months ago
• ogotoh / spaln
  Genome mapping and spliced alignment of cDNA or amino acid sequences
  ☆107Updated 6 months ago
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆117Updated 8 months ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆117Updated 6 months ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆101Updated last month
• rrwick / Badread
  a long read simulator that can imitate many types of read problems
  ☆252Updated last year
• nanoporetech / pod5-file-format
  Pod5: a high performance file format for nanopore reads.
  ☆168Updated 3 weeks ago
• marbl / HG002
  A complete diploid human genome
  ☆139Updated 2 months ago
• refresh-bio / agc
  Assembled Genomes Compressor
  ☆175Updated last year
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆139Updated last year