smarco / WFA2-libLinks
WFA-lib: Wavefront alignment algorithm library v2
☆207Updated last week
Alternatives and similar repositories for WFA2-lib
Users that are interested in WFA2-lib are comparing it to the libraries listed below
Sorting:
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆199Updated 3 years ago
- SIMD partial order alignment tool/library☆171Updated 4 months ago
- Global alignment and alignment extension☆141Updated 2 years ago
- Code examples of fast and simple k-mer counters for tutorial purposes☆171Updated 5 years ago
- Aligns short reads using dynamic seed size with strobemers☆189Updated last week
- base-accurate DNA sequence alignments using WFA and mashmap3☆210Updated 2 weeks ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆134Updated 3 months ago
- Assembled Genomes Compressor☆176Updated last year
- ☆284Updated last month
- Pairwise whole genome aligner☆225Updated last week
- Graphical Fragment Assembly (GFA) Format Specification☆218Updated last year
- A complete diploid human genome☆140Updated 4 months ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆230Updated 3 weeks ago
- A fast approximate aligner for long DNA sequences☆286Updated last year
- CLI tool for flexible and fast adaptive sampling on ONT sequencers☆194Updated 9 months ago
- Pod5: a high performance file format for nanopore reads.☆170Updated 2 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆247Updated last month
- A fast K-mer counter for high-fidelity shotgun datasets☆140Updated last week
- Long read / genome alignment software☆310Updated last month
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆161Updated this week
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆238Updated 3 weeks ago
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆100Updated 9 months ago
- De novo genome assembler for long uncorrected reads☆229Updated 2 years ago
- a long read simulator that can imitate many types of read problems☆265Updated last year
- Read Until client library for Nanopore Sequencing☆107Updated last year
- Program for aligning DNA sequences, a pairwise aligner.☆239Updated 7 months ago
- Yet another k-mer analyzer☆157Updated last month
- ☆126Updated 2 years ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆325Updated 4 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆154Updated this week