smarco / WFA2-libLinks
WFA-lib: Wavefront alignment algorithm library v2
☆187Updated last month
Alternatives and similar repositories for WFA2-lib
Users that are interested in WFA2-lib are comparing it to the libraries listed below
Sorting:
- SIMD partial order alignment tool/library☆172Updated last year
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆200Updated 3 years ago
- Aligns short reads using dynamic seed size with strobemers☆172Updated this week
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆124Updated 2 weeks ago
- Global alignment and alignment extension☆132Updated 2 years ago
- ☆269Updated last week
- Long read / genome alignment software☆289Updated 7 months ago
- Graphical Fragment Assembly (GFA) Format Specification☆209Updated 10 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆191Updated 2 weeks ago
- Fast and frugal disk based k-mer counter☆292Updated 6 months ago
- Program for aligning DNA sequences, a pairwise aligner.☆223Updated last week
- Assembled Genomes Compressor☆166Updated 7 months ago
- Pairwise whole genome aligner☆169Updated 2 weeks ago
- ☆198Updated 2 months ago
- A complete diploid human genome☆121Updated 5 months ago
- De novo genome assembler for long uncorrected reads☆223Updated last year
- Code examples of fast and simple k-mer counters for tutorial purposes☆171Updated 5 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆231Updated 10 months ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆284Updated last month
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆220Updated last week
- a long read simulator that can imitate many types of read problems☆227Updated 11 months ago
- A fast approximate aligner for long DNA sequences☆282Updated 8 months ago
- Pod5: a high performance file format for nanopore reads.☆150Updated last month
- Sequence-to-graph mapper and graph generator☆448Updated last year
- Tandem Repeats Finder: a program to analyze DNA sequences☆177Updated 2 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆151Updated 5 months ago
- Align proteins to genomes with splicing and frameshift☆373Updated last week
- ClairS - a deep-learning method for long-read somatic small variant calling☆85Updated 3 weeks ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆137Updated 2 weeks ago
- Oxford Nanopore Technologies fast5 API software☆154Updated last year