smarco / WFA2-lib
WFA-lib: Wavefront alignment algorithm library v2
☆177Updated last week
Alternatives and similar repositories for WFA2-lib:
Users that are interested in WFA2-lib are comparing it to the libraries listed below
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆200Updated 3 years ago
- SIMD partial order alignment tool/library☆166Updated last year
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆119Updated this week
- Aligns short reads using dynamic seed size with strobemers☆165Updated this week
- Code examples of fast and simple k-mer counters for tutorial purposes☆168Updated 5 years ago
- Assembled Genomes Compressor☆160Updated 4 months ago
- Global alignment and alignment extension☆131Updated last year
- base-accurate DNA sequence alignments using WFA and mashmap3☆186Updated last week
- a long read simulator that can imitate many types of read problems☆208Updated 8 months ago
- ☆268Updated 3 months ago
- Pod5: a high performance file format for nanopore reads.☆144Updated 4 months ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆207Updated last month
- Long read / genome alignment software☆279Updated 4 months ago
- A minimap2 frontend for PacBio native data formats☆189Updated last month
- Pairwise whole genome aligner☆151Updated last week
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆204Updated last month
- A complete diploid human genome☆116Updated 2 months ago
- Graphical Fragment Assembly (GFA) Format Specification☆206Updated 7 months ago
- Program for aligning DNA sequences, a pairwise aligner.☆216Updated 3 weeks ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆148Updated 2 months ago
- ClairS - a deep-learning method for long-read somatic small variant calling☆82Updated last month
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆223Updated 7 months ago
- ☆181Updated this week
- Read Until client library for Nanopore Sequencing☆104Updated 6 months ago
- A fast K-mer counter for high-fidelity shotgun datasets☆124Updated last month
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆215Updated last year
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆102Updated 2 months ago
- Fast and frugal disk based k-mer counter☆286Updated 3 months ago
- Genome browser and variant annotation☆296Updated last week
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆175Updated this week