smarco / WFA2-libLinks
WFA-lib: Wavefront alignment algorithm library v2
☆206Updated 7 months ago
Alternatives and similar repositories for WFA2-lib
Users that are interested in WFA2-lib are comparing it to the libraries listed below
Sorting:
- Global alignment and alignment extension☆140Updated 2 years ago
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆199Updated 3 years ago
- SIMD partial order alignment tool/library☆170Updated 3 months ago
- Aligns short reads using dynamic seed size with strobemers☆189Updated 3 weeks ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆210Updated 3 months ago
- Assembled Genomes Compressor☆175Updated last year
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆134Updated 2 months ago
- A complete diploid human genome☆140Updated 3 months ago
- Pod5: a high performance file format for nanopore reads.☆168Updated last month
- Code examples of fast and simple k-mer counters for tutorial purposes☆171Updated 5 years ago
- ☆282Updated last week
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆228Updated this week
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆244Updated 3 weeks ago
- Pairwise whole genome aligner☆225Updated last month
- Graphical Fragment Assembly (GFA) Format Specification☆218Updated last year
- A fast approximate aligner for long DNA sequences☆286Updated last year
- A fast K-mer counter for high-fidelity shotgun datasets☆138Updated 3 months ago
- Long read / genome alignment software☆310Updated 3 weeks ago
- Read Until client library for Nanopore Sequencing☆107Updated last year
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆96Updated 8 months ago
- BWT construction and search☆124Updated 2 weeks ago
- De novo genome assembler for long uncorrected reads☆229Updated 2 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆161Updated 2 months ago
- CLI tool for flexible and fast adaptive sampling on ONT sequencers☆193Updated 8 months ago
- alignment to variation graph inducer☆156Updated 3 weeks ago
- ☆126Updated 2 years ago
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆183Updated last year
- a long read simulator that can imitate many types of read problems☆258Updated last year
- Randomly subsample sequencing reads or alignments☆250Updated this week
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆153Updated last week