shenwei356 / strobemersLinks
A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
☆14Updated 4 years ago
Alternatives and similar repositories for strobemers
Users that are interested in strobemers are comparing it to the libraries listed below
Sorting:
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆46Updated last year
- Filter of Pairwise Alignement☆44Updated 3 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated last month
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- Iterate over minimizers of a DNA sequence☆31Updated last year
- ☆14Updated 4 years ago
- Variant call adjudication☆16Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- Shared k-mer content between two genomes☆18Updated 2 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Remove human reads from a sequencing run☆40Updated 2 months ago
- Simulate mutations in genomes☆15Updated 5 years ago
- Histosketching Using Little Kmers☆56Updated 2 years ago
- Validate and edit small eukaryotic genome assemblies☆30Updated 2 years ago
- Kraken2 Server☆22Updated last year
- Efficient and fast querying and parsing of GTDB's data☆29Updated last month
- Read contamination removal☆25Updated last year
- Find Unique genomic Regions☆30Updated 3 weeks ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆43Updated 2 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 6 months ago
- Generate random test data for bioinformatics☆26Updated last year
- Viral genome coverage evaluation for metagenomic diagnostics☆27Updated last month
- A long read simulator based on badread idea☆22Updated 3 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆23Updated last week
- ☆32Updated 2 years ago
- A FASTA/FASTQ format parser library☆20Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆26Updated 5 months ago
- sunburst plots for taxonomy - working to update Krona☆40Updated 2 weeks ago