richarddurbin / modimizerLinks
a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
☆37Updated 4 years ago
Alternatives and similar repositories for modimizer
Users that are interested in modimizer are comparing it to the libraries listed below
Sorting:
- ☆28Updated 6 months ago
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- GBWT-based handle graph☆31Updated last week
- Filter of Pairwise Alignement☆44Updated 3 years ago
- ☆24Updated 2 months ago
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 7 months ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- ☆13Updated 9 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Updated 8 years ago
- De Bruijn graph representation in low memory☆35Updated last year
- Parallel Sequence to Graph Alignment☆36Updated 2 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 3 months ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- An experimental tool to find approximate max-cuts in a large graph☆10Updated 4 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 6 months ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆38Updated 4 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- ☆32Updated 2 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- ☆24Updated 4 years ago
- de Bruijn Graph-based read aligner☆34Updated 7 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago