richarddurbin / modimizerLinks
a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
☆37Updated 4 years ago
Alternatives and similar repositories for modimizer
Users that are interested in modimizer are comparing it to the libraries listed below
Sorting:
- ☆28Updated 4 months ago
- Filter of Pairwise Alignement☆45Updated 3 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 3 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 7 years ago
- De Bruijn graph representation in low memory☆36Updated last year
- Indel-aware consensus for aligned BAM☆21Updated last week
- ☆25Updated 4 years ago
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆25Updated last year
- ☆14Updated 9 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated last month
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 8 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆53Updated 5 months ago
- GBWT-based handle graph☆31Updated last month
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 4 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 4 months ago
- ☆25Updated 4 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Python bindings to minimap2☆16Updated 7 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆25Updated 4 months ago