richarddurbin / modimizer
a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
☆37Updated 3 years ago
Alternatives and similar repositories for modimizer:
Users that are interested in modimizer are comparing it to the libraries listed below
- ☆28Updated 3 weeks ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 4 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆41Updated last year
- ☆25Updated 3 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- GBWT-based handle graph☆31Updated last month
- De Bruijn graph representation in low memory☆36Updated 10 months ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- GFA insert into GenomicSQLite☆49Updated 3 years ago
- ☆14Updated 9 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆16Updated 5 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Python bindings to minimap2☆16Updated 7 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 6 months ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 6 months ago
- ☆15Updated 4 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 2 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆39Updated 6 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆24Updated last week
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 7 years ago
- Pan-genome Seed Index☆20Updated last month
- Bam Read Index - Extract alignments from a bam file by readname☆25Updated last year
- Construct a Physical Map from Linked Reads☆18Updated last year