richarddurbin / modimizerLinks
a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
☆37Updated 4 years ago
Alternatives and similar repositories for modimizer
Users that are interested in modimizer are comparing it to the libraries listed below
Sorting:
- ☆28Updated 8 months ago
- Contains the description of a file format to store kmers and associated values☆34Updated 3 years ago
- ☆24Updated 4 months ago
- De Bruijn graph representation in low memory☆35Updated last year
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- Layout module for raw de novo genome assembly of long uncorrected reads.☆20Updated 4 years ago
- Parallel Sequence to Graph Alignment☆36Updated 3 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Indel-aware consensus for aligned BAM☆21Updated 4 months ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- ☆13Updated 9 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Updated last month
- GBWT-based handle graph☆31Updated 2 weeks ago
- ☆24Updated 4 years ago
- An experimental tool to find approximate max-cuts in a large graph☆10Updated 4 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Utilities to detect and profile `het-kmers`☆12Updated last year
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 9 months ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Updated 4 years ago
- de Bruijn Graph-based read aligner☆34Updated 7 years ago
- Next Index to Query Kmer Intersection☆17Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- reference free variant assembly☆34Updated 2 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 5 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago