Alternatives and similar repositories for modimizer

Users that are interested in modimizer are comparing it to the libraries listed below

• VGP / vgp-tools
  ☆28Updated last month
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆42Updated last year
• rvaser / rala
  Layout module for raw de novo genome assembly of long uncorrected reads.
  ☆21Updated 4 years ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆16Updated 6 years ago
• lh3 / rmaxcut
  An experimental tool to find approximate max-cuts in a large graph
  ☆11Updated 4 years ago
• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 5 years ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆33Updated 4 years ago
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆32Updated 2 years ago
• langmead-lab / vargas
  ☆25Updated 4 years ago
• richarddurbin / syng
  syncmer graphs, and perhaps other sorts of sequence graphs
  ☆20Updated 2 months ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated 2 months ago
• mbhall88 / pafpy
  A lightweight library for working with PAF (Pairwise mApping Format) files
  ☆31Updated 3 years ago
• medvedevgroup / BubbZ
  ☆15Updated 4 years ago
• Malfoy / Blight
  De Bruijn graph representation in low memory
  ☆36Updated 10 months ago
• gregorykucherov / spaced-seeds-for-metagenomics
  ☆14Updated 9 years ago
• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆34Updated 2 years ago
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆24Updated last month
• rcedgar / syncmer
  Validation of sycnmers compared to minimizers
  ☆11Updated 3 weeks ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated 2 months ago
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 5 years ago
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated this week
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆26Updated 2 years ago
• TavorB / spectral_jaccard_similarity
  ☆14Updated 2 years ago
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆54Updated 3 years ago
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆28Updated last week
• ekg / HLA-zoo
  genome variation graphs constructed from HLA GRCh38 ALTs
  ☆23Updated 3 years ago
• mkirsche / sapling
  SAPLING: Suffix Array Piecewise Linear INdex for Genomics
  ☆25Updated 4 years ago
• HongzheGuo / deBGA
  de Bruijn Graph-based read aligner
  ☆33Updated 6 years ago
• isovic / minialign
  Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.
  ☆10Updated 7 years ago