richarddurbin / modimizerLinks
a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
☆37Updated 3 years ago
Alternatives and similar repositories for modimizer
Users that are interested in modimizer are comparing it to the libraries listed below
Sorting:
- ☆28Updated 2 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 4 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- GBWT-based handle graph☆31Updated 3 months ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- ☆25Updated 4 years ago
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Updated 8 months ago
- ☆15Updated 4 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆25Updated last year
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- ☆14Updated 9 years ago
- De Bruijn graph representation in low memory☆36Updated 11 months ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 7 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 2 months ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Pan-genome Seed Index☆20Updated 3 months ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 8 months ago
- Python bindings to minimap2☆16Updated 7 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago